Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq288 351 3e-92 seq620 120 9e-23 seq49 118 3e-22 >seq288 Length=849 Score = 351 bits (388), Expect = 3e-92 Identities = 417/559 (75%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || |||||||| ||||||||| || |||||||| || ||||||||||| || || || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 ||||| || |||||||| || |||||||| | |||||||||||||||||| || |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || | ||||| ||||||||||| ||| ||||||| || || || ||||| ||||||| Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA---A 36629 | ||||| || | ||| |||| | || ||||||||||||| ||||||| ||| | Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAA 608 Query 36630 GCTGAGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 ||| | ||| ||| |||| ||| || || | ||||| || || || ||||| || | Sbjct 607 GCT---ACACCTAATAAGAA-GTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAG 552 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||||||||| | | ||||||||||| | |||||||||||||| |||||| | ||| || Sbjct 551 CCACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGA 492 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 || | | ||| |||| ||||||||||||||| || | | || ||| | || || Sbjct 491 ACTAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGG 432 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG- 36867 ||||| ||||| || ||||| || ||||| ||||| | ||| || || | || || | Sbjct 431 TTCACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAA-GCAGC 373 Query 36868 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 36927 | |||||||| | || |||||||||| || || ||||| || | || | |||| Sbjct 372 TTGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 313 Query 36928 TGTTTGTACTTGTAACCCA 36946 | | ||| || || | ||| Sbjct 312 TTTCTGTGCTAGTGATCCA 294 >seq620 Length=282 Score = 120 bits (132), Expect = 9e-23 Identities = 192/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 36117 TTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCA 36176 || || |||||||| || || | ||| || | ||| || | || ||||||||| Sbjct 273 TTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACTGGCCAAGCA 214 Query 36177 GCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 36236 || | |||||| |||||| || || || || || || || |||||||| | | Sbjct 213 GCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAGATTAAACGT 154 Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 |||||||| || || || || || ||||| || || ||||||||||| |||||||| || Sbjct 153 CCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAA 94 Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCACGAATAAGTGAGGAAGTAACAAGAC 36354 || ||||| |||| | ||| || |||||||| || | || || |||||| Sbjct 93 CCGTAGTTAGCAGAT--ACGCCGTCTTCAGTTTCACGGATTAAACTAGATGTTACAAGAG 36 Query 36355 TTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 |||||||||||| |||||||| ||||| || Sbjct 35 AACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 118 bits (130), Expect = 3e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| || || ||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 2042 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||||||||||||| || || | || | | |||||| || || Sbjct 2043 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGAT 2102 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 36130 || |||||||| || || || | || || |||||||| Sbjct 2103 TGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150411893905014