Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq288 385 1e-102 seq49 89.7 2e-13 >seq288 Length=849 Score = 385 bits (426), Expect = 1e-102 Identities = 422/556 (76%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 ||||||||||| ||| ||||| || |||||||| || ||||||||||| |||||||| Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGT 5734 ||||| ||||| ||||||||||| ||||| | ||||||||||||| ||| || || ||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 5735 CCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACG 5794 |||| ||||| ||||| ||||||| | ||||| || || || ||||| | |||||| Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 5795 CAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCT 5854 ||||||| || ||||| ||||| | ||| ||||||||||||| ||||||| ||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAA 608 Query 5855 GCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCA 5913 || | ||| |||||| ||||| || || || |||||||| || || || ||||||||||| Sbjct 607 GCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCA 549 Query 5914 TTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCT 5973 || || | | || |||||||| | || |||||||| | || || | ||| || || Sbjct 548 CTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAACT 489 Query 5974 GGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTC 6033 || | ||| || || | |||||||||||||| || | || ||||| || || ||||| Sbjct 488 AGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTTC 429 Query 6034 ACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG-TAG 6092 ||| || |||||||| || ||||| |||||||| | || || | || || |||| | | Sbjct 428 ACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAA-GCAGCTTG 370 Query 6093 TTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGT 6152 | || ||||| | || || |||||||| ||||| ||||| || | || | ||||| | Sbjct 369 TAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTT 310 Query 6153 TGGTGCTAGTAACCCA 6168 |||||||| | ||| Sbjct 309 CTGTGCTAGTGATCCA 294 >seq49 Length=2147 Score = 89.7 bits (98), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| || ||||||||||| || || ||||||||||||||||||||||| | | Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 2042 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTG-GGA--ACGATTCTACCGCTAGAGTCAACGACT 5311 |||||||| | | || ||||||||| || ||| | |||| ||||| || Sbjct 2043 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTA---TCAACAACC 2099 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGT 5352 || || |||||||| || || || | || || |||||||| Sbjct 2100 GATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152606473721226