Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq288 351 3e-92 seq49 127 6e-25 seq620 123 8e-24 >seq288 Length=849 Score = 351 bits (388), Expect = 3e-92 Identities = 415/558 (74%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || |||||||| ||||||||| || |||||||| || ||||||||||| || || || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 ||||| || |||||||| || |||||||| | |||||||||||||||||| || |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||| ||||||||||| ||| ||||||| || || || ||||| ||||||| Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAA 26109 | ||||| || | ||| |||| | || ||||||||||||| ||||||| || || Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAA 608 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 ||| | || | | ||||| || || | |||||| || || |||||||| || | | Sbjct 607 GCT---ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGC 551 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 |||||||| | | ||||||||||| | |||||||||||||| |||||| | |||||| Sbjct 550 CACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAA 491 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 || | | ||| || | ||||||||||||||| || | | || ||| | || || Sbjct 490 CTAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGT 431 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG-T 26348 ||||| ||||| || ||||| || ||||| ||||| | ||| || || | || || | | Sbjct 430 TCACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAA-GCAGCT 372 Query 26349 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 |||||||| | || |||||||||| || || ||||| || | || | ||||| Sbjct 371 TGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 312 Query 26409 GTTTGTACTTGTAACCCA 26426 | ||| || || | ||| Sbjct 311 TTCTGTGCTAGTGATCCA 294 >seq49 Length=2147 Score = 127 bits (140), Expect = 6e-25 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| || |||||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 2042 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | ||||||||||||||| || || | || | | |||||| || || Sbjct 2043 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGAT 2102 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 25610 || |||||||| || || || | || || |||||||| Sbjct 2103 TGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 >seq620 Length=282 Score = 123 bits (136), Expect = 8e-24 Identities = 193/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 25597 TTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCA 25656 || || |||||||| || || | ||| || | ||| || | || ||||||||| Sbjct 273 TTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACTGGCCAAGCA 214 Query 25657 GCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 25716 || | |||||| |||||| ||| || || || || || || |||||||| | | Sbjct 213 GCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAGATTAAACGT 154 Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776 |||||||| || || || || || ||||| || || ||||||||||| |||||||| || Sbjct 153 CCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAA 94 Query 25777 CCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCACGAATAAGTGAGGAAGTAACAAGAC 25834 || ||||| |||| | ||| || |||||||| || | || || |||||| Sbjct 93 CCGTAGTTAGCAGAT--ACGCCGTCTTCAGTTTCACGGATTAAACTAGATGTTACAAGAG 36 Query 25835 TTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 25868 |||||||||||| |||||||| ||||| || Sbjct 35 AACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151950659053116