Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq2514 95.1 3e-15 >seq2514 Length=426 Score = 95.1 bits (104), Expect = 3e-15 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1242 GAAGTAGCAGAGGGTGCGCTTACGGACGAGGATACCGAAATTATTTGGGTGGCGTTTGGT 1301 || || ||||| || || || || ||||| || || | ||||| ||| | || || Sbjct 1 GAGGTGGCAGAAGGCGCCCTGACTGACGAAGACACAGTGATTATATGGATATGCTTCGGG 60 Query 1302 AACCCGACGCGTAACACTGGGCGTTTCCGTGAATGTTTCCGCAAATACAAACACCGCTGG 1361 ||||| |||| ||| | || || ||| | || || ||| | || | ||| | ||| Sbjct 61 AACCCCACGCAGAACTCAGGTCGCTTCAGAGAGTGCTTCAGGAAGTTTCGACATAGGTGG 120 Query 1362 AAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACCAACAAGCAGCAACTGCAAAAG 1421 | | ||| || ||||| || || || |||||||||||||| | || || | | Sbjct 121 ATACACAAGCATATCGACAGTCGTACGGTCGAAGGCACCAACAAAGAACAGCTCGATAGA 180 Query 1422 TGGGTGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTC 1481 ||| || ||||| |||||||||||||| |||| || || || || ||||| || ||| Sbjct 181 ATGGTTGAAGACTATGGCGAAGACAGCGATATCGTCAAAGTACGTGTACGCGGCATATTC 240 Query 1482 CC 1483 || Sbjct 241 CC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123632261774532