Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq288 410 1e-109 seq620 196 5e-45 seq49 105 7e-18 >seq288 Length=849 Score = 410 bits (454), Expect = 1e-109 Identities = 406/525 (77%), Gaps = 0/525 (0%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||||||||| || |||||||| || | |||| ||| |||||||||| Sbjct 325 TCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCA 384 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || || || || |||||||||||||||||||| |||||| | ||||| ||||| || | Sbjct 385 TCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGAT 444 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 ||||| | || || |||||||||||| ||||||| || |||||||||| || |||| | Sbjct 445 CACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCG 504 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || |||||||||| || | |||||||| || || | || |||||| | || || |||| Sbjct 505 GTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTG 564 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||||||||||| || |||||| | | || | | ||| || ||| Sbjct 565 GTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTG 624 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | ||||||||| ||||| ||||| |||||||||||||| | || || | ||| || | Sbjct 625 AATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTC 684 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| ||||||||| || || ||||| || || || |||| |||||| ||||||| Sbjct 685 CAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTG 744 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||||||||||||||| |||| |||||| || ||||||||||| | Sbjct 745 ATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAAC 804 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTG 163063 ||||||| || |||||||| ||||||||| ||| || || |||| Sbjct 805 ACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 196 bits (216), Expect = 5e-45 Identities = 211/278 (76%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 163066 TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGA 163125 || ||||| || | || ||||||||||||||||||||||| || ||| | | ||| | Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 163126 GAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACT 163185 |||||| || | || ||||||||||| || ||||||||||||||||| ||| Sbjct 62 GAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACT 121 Query 163186 TACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTC 163245 |||||||| || ||||| || || |||||||| || || |||||||| || || |||| Sbjct 122 TACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTC 181 Query 163246 AACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTC 163305 |||||||| ||| | | ||||||||| | ||||| | || || || | |||||||| Sbjct 182 AACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTA 241 Query 163306 ACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAA 163343 ||||| | ||||| |||||||||||||| ||||| Sbjct 242 ACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 >seq49 Length=2147 Score = 105 bits (116), Expect = 7e-18 Identities = 117/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGT 163380 ||||||||||||||| | || |||||||||||||||||||| || ||||| | ||| Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 | ||||| |||||||| || || | ||| | || | | ||||||||||| Sbjct 2080 CG---CGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTA 2024 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 |||||||| ||||| || ||||||||||| || || Sbjct 2023 ATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552920319494040