Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq566 522 3e-143 seq288 383 2e-101 seq620 152 6e-32 seq49 143 3e-29 >seq566 Length=2184 Score = 522 bits (578), Expect = 3e-143 Identities = 726/1012 (72%), Gaps = 4/1012 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | ||||||||||| || || ||| | || ||||| || | || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTA-TTATT 662 Query 164679 CCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 164737 ||| || || | ||| || |||| || ||| | || || || ||||||| || ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 164738 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTG 164796 ||| || ||||| | || ||||| || || ||||| ||| ||||| | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 164797 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 164856 | || || ||||| | |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 164857 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 164916 | || ||||| || ||| ||| |||| ||| ||||| ||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 164917 GTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA 164976 |||| || | ||||||| ||| | || || || ||| | || ||||| | |||| Sbjct 902 GTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 961 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | ||||| || || || ||||| |||||||| |||||||| || || || || ||| Sbjct 962 TTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTCT 1021 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | ||||| || || || || | |||||||| |||||||| |||||||| ||||| | Sbjct 1022 TAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 1081 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | || | ||| | || ||| | ||||| ||||| |||||||| || ||||| ||||||| Sbjct 1082 TTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCATA 1141 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| || ||||| || || || || ||||| ||||||| |||||||||| || | Sbjct 1142 TGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACTG 1201 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | ||||| ||| ||| || ||||| || ||||| || || |||||| | | Sbjct 1202 TAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 1261 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 |||| |||||| |||||||| ||||| || || || | |||||||| || || |||| Sbjct 1262 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCG 1321 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 165396 | | || || |||||||| || |||||||| || |||||||| ||||| || || | | Sbjct 1322 GTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAG 1381 Query 165397 GTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 165456 || | |||||| ||| |||| ||| | ||| | || | || | | || ||||| | Sbjct 1382 GTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACT 1441 Query 165457 TCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 165516 |||| ||| || | | ||||| ||||||||||||||||| || |||||||| |||| Sbjct 1442 TCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 1501 Query 165517 ACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAA 165576 | ||| |||| || ||||| | | | ||| |||| | || ||||| ||||||| Sbjct 1502 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAA 1561 Query 165577 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 165628 ||||| | |||||||| || || || || | || |||||||||||||| || Sbjct 1562 ACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 1613 >seq288 Length=849 Score = 383 bits (424), Expect = 2e-101 Identities = 411/540 (76%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 162979 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAG 163038 | ||| |||||| |||| || ||||||| || || || || || ||||| |||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 163039 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 163098 || || ||||| ||||| | || || |||||||||||| ||||||||||| |||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 163099 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 163158 || ||| | || ||| |||||||||| || | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 163159 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTC--CTTATCGGCATCTATG 163216 || || ||||||||||||| |||||| ||||| || |||||| ||| | | || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 163217 CATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTG 163276 | || ||||||||||||||||||||| || || ||||| ||||| || ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 163277 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 163336 |||| | ||| || || || || |||||||| ||||| ||| | || || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 163337 AAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTG 163396 ||||| |||||||| | ||||| | || || ||||| || ||||||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 163397 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTG 163456 | ||||||||||| |||||||| || |||||||| ||||||||| || || ||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 152 bits (168), Expect = 6e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 163543 AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGC 163602 ||||| |||||||| || || ||||||||||| || ||||||||||| || ||||| || Sbjct 86 AACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 145 Query 163603 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTC 163662 ||||| || ||||| ||||||||||| || ||||||||| | | | |||||| Sbjct 146 TACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCTCGTGCTTTACACTTC 205 Query 163663 TTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATG 163722 ||| | || || ||||| || || || |||||||| ||||| || || || || || ||| Sbjct 206 TTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATG 265 Query 163723 GCATTCAACCTCAACGG 163739 ||||||||| | || || Sbjct 266 GCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 143 bits (158), Expect = 3e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 163711 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGT 163770 || || || |||||||||||| | || ||||||||||||||||| || | ||||| | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 163771 CAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAA 163830 || || || ||| ||||||||||||| ||| | | ||||| |||| | | ||||||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 163831 GTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 163869 || ||||| || |||||||| ||||||||||| || ||| Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563042108505080