Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq2514 143 8e-30 >seq2514 Length=426 Score = 143 bits (158), Expect = 8e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 12791 GAGGTAGCAGAGGGTGCGCTTACGGACGAAGACACTGAGATTATCTGGGTGGCGTTCGGA 12850 ||||| ||||| || || || || ||||||||||| | |||||| ||| | ||||| Sbjct 1 GAGGTGGCAGAAGGCGCCCTGACTGACGAAGACACAGTGATTATATGGATATGCTTCGGG 60 Query 12851 AACCCGACGCGTAACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGG 12910 ||||| |||| ||| | || || ||| | || || ||| | || | | ||| | ||| Sbjct 61 AACCCCACGCAGAACTCAGGTCGCTTCAGAGAGTGCTTCAGGAAGTTTCGACATAGGTGG 120 Query 12911 AAAACTGCGCAGATTGACAGCCGGACGGTGGAAGGCACTAACAAACAGCAGTTGCAGAAA 12970 | | ||| || ||||| || ||||| |||||||| |||||| | ||| | | | | Sbjct 121 ATACACAAGCATATCGACAGTCGTACGGTCGAAGGCACCAACAAAGAACAGCTCGATAGA 180 Query 12971 TGGGTTGATGACTACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTC 13030 |||||| ||||| || ||||||||||| |||| ||| | ||||| |||||||||||| Sbjct 181 ATGGTTGAAGACTATGGCGAAGACAGCGATATCGTCAAAGTACGTGTACGCGGCATATTC 240 Query 13031 CC 13032 || Sbjct 241 CC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143146747020732