Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7782 407 3e-108 seq17508 93.3 8e-14 seq18521 89.7 1e-12 >seq7782 Length=16676 Score = 407 bits (450), Expect = 3e-108 Identities = 1226/1865 (66%), Gaps = 86/1865 (5%) Strand=Plus/Minus Query 212585 GGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGC 212644 |||||| || ||||||||||||||||| || ||||| |||| || | |||||| | Sbjct 8054 GGTGCGAAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGA 7995 Query 212645 TGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGA 212704 ||||| | || | ||| ||||| || || | ||| ||||| Sbjct 7994 GGTGAGCTGGGCGGGCGTGG------GGT--------TGGCC-AGGTGGATGTTGAGGGA 7950 Query 212705 CTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGA 212764 ||| |||| ||| | | | | | ||| || |||||||| |||| |||| Sbjct 7949 CTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCCATGTCGATGACGCACTTCTGCCG 7890 Query 212765 GAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTG 212824 || |||||||||||||||| ||| || ||||| || |||| || || | ||| || Sbjct 7889 GATCTCCCACACGGTCTTGTAGAGCTCCTTGAGCTCGCGGGGGATGCTGGCCACGTTTTG 7830 Query 212825 CACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGT 212884 ||| || || | || | | ||| ||||| || ||||||| || || | | | Sbjct 7829 CACGGAGCCACGGTTGCCCATGATCTGGTTGCGCACCTCGGCGTTCCACAGCCCAC-GCT 7771 Query 212885 CTC-CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCC 212943 | |||| ||| ||||| |||||| || ||| ||||| | ||||| | | Sbjct 7770 CGATCAGGTCGCTGAGCAGGTACTTGTTGACGATGGTGAACTCACCCGCTAGCACACGTC 7711 Query 212944 TCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAG 213003 ||| | ||| || || ||||||||| ||||||||| || || ||||| || | Sbjct 7710 GGGAGTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGG 7651 Query 213004 TGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGA 213063 || || ||||||||||| || | |||||| || | ||| |||||||| || Sbjct 7650 TGGAAGCGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCGCACGCCGTGCTCCTGGACCT 7591 Query 213064 -GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCAC 213122 ||||| || || | | ||||||||| | | || || | ||| |||| Sbjct 7590 TGGCGCGGAGGC-CGGGCCAGTCCCAGCGGGTGGAGGGGG---------TGACGCCCCAC 7541 Query 213123 ATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGA--GTAGGGGC 213180 ||||| || || |||| ||| ||||| | |||| ||| || || | |||||||| Sbjct 7540 ATGTCGAATTGGAAGACGCCCTTGCTGATGGGGGAGCC--GGCAAACGTCTCGTAGGGGC 7483 Query 213181 CATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATA 213240 | | || | |||| | || ||| || | || ||| || |||| ||||| || || | Sbjct 7482 CCTCCTTCATGGCAATTTCCATGGAGGCTTCCACGGCGCCGAAGTACATGGTCTCGAAGA 7423 Query 213241 TCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTG--GAA 213298 | ||| |||| |||| | || || || ||| |||||| | | ||| ||| ||| Sbjct 7422 TGTCCTTGTTCAGCTGGTGCGCGTCCGGAGACTCGAAGGGGAACCGCATC--TTGATGAA 7365 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTT 213355 |||| ||||| || ||||| || ||||||||||||| ||| | || ||| || ||| Sbjct 7364 GGCATCCGCCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGCTT 7305 Query 213356 GGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGC 213415 || |||||||| ||||| |||||| |||||||| ||| ||||||||||| | Sbjct 7304 GGC---CTCCTCCACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTCAC 7248 Query 213416 CACTTTGGTGACATGG-------GC--CAGGTACTCGTGA------TTGAA----CACGT 213456 ||| ||||||| | | || ||||| | | | ||| | || Sbjct 7247 CACCTTGGTGATCTCGTACAGACGCTGCAGGTCGTAGGTAGGGGCCTTGCCGCTGCCCGA 7188 Query 213457 AGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCT 213516 || | || ||| ||||||| | | ||| || ||| |||||||| |||||||||| Sbjct 7187 AGGCTCC-TCCAGCACAAAGGCCGAGAGGTTGACCGAGGCAAGGTTGCAGACGGCCACCT 7129 Query 213517 CCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCA 213576 | | | | | |||||||| |||||||| ||||| |||||| | | ||| |||| Sbjct 7128 CGTCGGGGGCGGTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCA 7069 Query 213577 GGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGG 213636 | ||||| ||||| ||||| |||| || ||||| | ||||||||||| | || | Sbjct 7068 GATTCTGCTGGTTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCG 7009 Query 213637 TCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC-CGCCTG 213695 |||| | |||||| ||| | | ||| || | |||||||| |||| || || Sbjct 7008 TCTCCACCTGGGAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGTG 6949 Query 213696 ACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACC 213755 | | ||| | | ||||||| |||||||||| ||||| || | || || || Sbjct 6948 CCTTC-CCGCTCTT---CTCGTACGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACACG 6893 Query 213756 CTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTC-ATCTCTGAC 213814 ||| || || || ||| || | ||| |||||| ||||| |||| || Sbjct 6892 TCCGCCAAGCCGGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTC-CAC 6834 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGG-TC-CTCC-T 213871 | ||||||||||| || || ||| || || |||||||| | || || |||| Sbjct 6833 GCGCTGCATGAACAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAG 6774 Query 213872 CTCGTCCACTCCAGAG-TTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||||| | | | | || |||||||| || || || || |||||||| |||||||||| Sbjct 6773 CTCGT----TGCCGTGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACG 6718 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGG 213987 |||| | ||| ||||| |||| |||| | ||| || ||||||||||| | || Sbjct 6717 GCTCGAGGTAAATGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGG 6658 Query 213988 CCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCG 214047 || |||||||| ||||| | ||| || | |||||||| ||||| | || Sbjct 6657 CCGTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGC 6598 Query 214048 CTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACT 214107 || || ||| | ||| | | |||| ||||| | || || || |||||| | | Sbjct 6597 GGATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATT 6538 Query 214108 TGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGA 214167 ||||||| |||||| || | | || || |||||| | ||| ||| || | | Sbjct 6537 TGGAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCA 6478 Query 214168 GGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGG 214227 | | || | ||||||| || ||||| || | || | ||| | ||||||||| |||| Sbjct 6477 TGGTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGG 6418 Query 214228 GGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGA 214287 | ||||||| | | | ||| | || | ||| | |||||||| | | | | | || Sbjct 6417 GAGTGGCATGCGTGAAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGA 6358 Query 214288 TGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATG 214346 ||| | ||||||||| | || ||| | ||| | |||||||||||| | ||| || Sbjct 6357 CGTCCTCCTTGTGGATGCCGATGGC-CACGCGCATGATCATGTGCTGGGGGCGCTCCAT- 6300 Query 214347 GGTCCTTTGGGGCC--CTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGG 214404 | | | | || ||||||||||||||| |||||| |||||||| || |||||| Sbjct 6299 -GACGATGCCGTCCATCTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGT 6241 Query 214405 AGTAG 214409 |||| Sbjct 6240 CGTAG 6236 >seq17508 Length=3941 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 213778 CGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 |||||||||| | ||| |||| || || || |||| ||| |||| || |||| Sbjct 2684 CGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGA 2625 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||||||| | |||||| || | | || | ||| ||| ||| ||||| | || Sbjct 2624 TCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTTTCCTCA 2565 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 || || | ||||| || ||||| ||||||||||| ||||| || |||||||| |||| Sbjct 2564 AGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGGCCCCCG 2505 Query 213958 GCCTCTT---GCCGCCCTGGTCCAC 213979 ||| ||| |||||||| || || Sbjct 2504 GCCGCTTCCCCCCGCCCTGATCAAC 2480 >seq18521 Length=3205 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 48521 TTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGG 48580 ||||||||||| |||||||| || || |||||||| |||||||| || | ||||| Sbjct 81 TTCTCATTGACGATCCCATCCGAGGCGGCAAAGAAAGCAAGGACGTGCGAGACAAAATGA 140 Query 48581 CGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCC 48640 ||||| |||| | ||| | |||| || ||| | | ||||||||| || || Sbjct 141 CGCTCTTTGTCAGAGAGCTTCTCCCAGTCCGTCTTGTCGTGGGCCAGGTCCAGCTCCTCT 200 Query 48641 ACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 | ||||||||||| || |||| ||||||||| |||| || Sbjct 201 GCCGTCCAGAAGGAGGCCTCGGCTTGCTTGTACATGTCCCAGAT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931255773789440