Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7782 214 3e-50 >seq7782 Length=16676 Score = 214 bits (236), Expect = 3e-50 Identities = 795/1232 (65%), Gaps = 27/1232 (2%) Strand=Plus/Minus Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAAGGGCA 221489 ||| |||||||| ||||| |||||| || || || || || ||||| |||||| | Sbjct 7439 GTACATGGTCTCGAAGATGTCCTTGTTCAG-CTGGTGCGCGTCCGGAGACTCGAAGGGGA 7381 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 |||| | | ||| | || ||||| || || || || || |||||||| | ||| | Sbjct 7380 ACCGCATCTTGATGAAGGCATCCGCCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGC 7321 Query 221550 TCCTGTTGGAA-GC--GGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 | |||||||| || |||| | || ||| || || ||||||| |||||| | || Sbjct 7320 GCATGTTGGAACGCTTGGCCTCCTC---CACAGGGTAGAAGTTGATGTCGATGACGCGGT 7264 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAG---CTTCTGGTGATTGAACACCA 221663 | ||||| | || | || || | |||| ||| || | ||| | | Sbjct 7263 TCAGGTTGCGGGTCACCACCTTGGTGATCTCGTACAGACGCTGCAGGTCGTAGGTAGGGG 7204 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTC-----CACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || ||||| | | || || | | |||||| || ||| || ||| || Sbjct 7203 CCTTGCCGCTGCCC--GAAGGCTCCTCCAGCACAAAGGCCGAGAGGTTGACCGAGGCAAG 7146 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || |||||||||||||| | ||| |||| |||||||| || || |||||| Sbjct 7145 GTTGCAGACGGCCACCTCGTCGGGGGCGGTGTACTCGATGATCTCCGTGCAAAGGTTGGA 7086 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 | ||||||| |||||| | | || || |||||| | ||| ||||||||| | || Sbjct 7085 GGACTTGATCACCCCCAGATTCTGCTGGTTCGACTTGAGGTTGCAAGCGTCCTTAAACAG 7026 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGC 221898 ||| |||| ||| ||||||| ||| | ||| | | ||| || | | ||| Sbjct 7025 CATGTAGGGCGTGCCCGTCTCCACCTGGGAGTCCAACACGGCGAACCACAGCTGTTGGGC 6966 Query 221899 GCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAA 221958 | | || |||| ||| | || |||| || ||| |||||| | || Sbjct 6965 CTTGA---TCACCTTGCGTGCCTTCCCGCTCTTCTCGTACGACTCGTAGAGCTGCTTGAA 6909 Query 221959 CTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTG 222018 || || ||| || | || ||| ||| || ||| ||| || | ||| ||||| Sbjct 6908 CTCCTCCCCGCACACGTCCGCCAAGCCGGGGCACTCATTGGGGCAAAACAGGGACCAGTC 6849 Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || || | || | ||||||||| | || || |||| || || | ||| || || Sbjct 6848 ACCGTCGTTCTCCACGCGCTGCATGAACAAATCAGGCGTCCAGAGGGCATAAAACAGGTC 6789 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 | || |||| | ||| ||||| || || | ||| || | ||||| || ||||| Sbjct 6788 ACGGGCTCGCTCCAGCTCGTTGCCGTGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTC 6729 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATC 222198 |||||||||||||| || || | ||| | | ||| ||||| || ||||| || Sbjct 6728 GGCGTGCCACGGCTCGAGGTAAATGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTC 6669 Query 222199 CACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACC 222258 ||| | || ||||||||| || || | || || | |||||||| ||| Sbjct 6668 CACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGAGGTACC 6609 Query 222259 GTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACC 222318 ||| | ||| ||||| | | | ||| | | ||| | |||| |||||| || Sbjct 6608 GTTCGAGCCGCGGATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCC 6549 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 |||||| ||| ||||| |||||| |||||| ||||| |||||| || || || Sbjct 6548 GCCGGCGAATTTGGAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGA 6489 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||||||||| | | | || || || || || || | ||| | || || | |||||| Sbjct 6488 GTCCTCCTTCATGGTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTT 6429 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGTACGTCTCTA 222497 || || |||||| |||| || || ||| ||| | ||||| || | || ||||| | Sbjct 6428 GAAAAGGGTGGGAGTGGCATGCGTGAAG-AGCTTTTGGGACATGAGGTTATAGGTCTCGA 6370 Query 222498 CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGG 222557 | | | ||| || ||| ||| || ||||| | |||| ||||| ||||| Sbjct 6369 TGGCGGCGTCGACGTCCTCCTTGTGGATGCCGATGGCCACGCGCATGATCATGTGCTGGG 6310 Query 222558 GCCTCTCCA-CAGGA-CCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 | | ||||| | || || | | || ||||||||| || || ||||| |||||||| Sbjct 6309 GGCGCTCCATGACGATGCCGTCCATCT--TGAGCAGGTAGGACTTCTCCAGGGTCTTGAA 6252 Query 222616 CCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647 || ||||||| | ||| ||||| | | ||| Sbjct 6251 GCCGAAGTAGTCGTAGTCGAAGTCCCGGTCGT 6220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 210/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 220939 GTCCGCCGCCATGTCAATGAGATCCTTCTGAGGCAGTTCGTAGGCCGTCTTGAAGACATC 220998 ||| ||||||||||| |||| |||||| | | || | | |||||| ||| || Sbjct 7922 GTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTC 7863 Query 220999 CTTGAGCTCAGACGGGAACGACGCGATAGCTTGTACAGAGCCCTTGTTGACCAAAAGCTC 221058 ||||||||| |||| || | ||| || ||||| |||| ||| | || Sbjct 7862 CTTGAGCTCGCGGGGGATGCTGGCCACGTTTTGCACGGAGCCACGGTTGCCCATGATCTG 7803 Query 221059 GGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTT 221118 | | |||| |||| | |||| || || | ||| ||| | ||| || || |||||| Sbjct 7802 GTTGCGCACCTCGGCGTTCCACAGCCCACGCTCGATCAGGTCGCTGAGCAGGTACTTGTT 7743 Query 221119 CACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTC 221178 || | ||| || |||| ||||| | | ||||| ||| || || || || || Sbjct 7742 GACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCTC 7683 Query 221179 GATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAG 221238 || |||||||||||| |||||||| || ||| |||||||||||||| || | ||| Sbjct 7682 GACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCAG 7623 Query 221239 CAGACTGTTGCGCA 221252 || ||||||| Sbjct 7622 GAGGGAATTGCGCA 7609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928568573167040