Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq566 509 2e-139 seq288 430 1e-115 seq620 143 3e-29 seq49 122 9e-23 seq22 102 8e-17 seq59 89.7 5e-13 >seq566 Length=2184 Score = 509 bits (564), Expect = 2e-139 Identities = 731/1022 (72%), Gaps = 6/1022 (1%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 592 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGC 651 Query 9875 CTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTT 9933 || || || ||||| || || | ||||||| ||||||| ||| | || || || || || Sbjct 652 CT-TTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 710 Query 9934 TGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTG-AGGGTGCTAATTTCC 9992 ||| || |||||| || || ||| | ||| | |||||| | ||| ||| || ||| Sbjct 711 TGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCT 769 Query 9993 TTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 10052 | || | || || ||||| ||||| | |||||||||||| | || || | |||| Sbjct 770 TAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGG 829 Query 10053 GTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTG 10112 | ||||| | || ||||||||| || ||| | || |||| ||| | ||||||||| Sbjct 830 GACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTA 889 Query 10113 TGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGA 10172 | || | || || || || | |||||| || || ||||| || || ||| | || Sbjct 890 TCGCATTACATGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTC 949 Query 10173 GATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTG 10232 | | | || || || || || || || || || || ||||| |||||||| || || | Sbjct 950 GTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCG 1009 Query 10233 TCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCG 10292 | ||| ||| | |||||||| || ||||| | ||||||||||| || || ||||| | Sbjct 1010 TTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTG 1069 Query 10293 GCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 10352 | || || || |||||||||||| | | ||| | || || || ||||| ||||| || | Sbjct 1070 GGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 1129 Query 10353 ATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCC 10412 | || |||||||||||||| || || || || | || || || | |||| ||||| | Sbjct 1130 ACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTC 1189 Query 10413 ACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAG 10472 | |||| ||||||||||||||||| | | ||||||| || |||||||| ||| | Sbjct 1190 ATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTG 1249 Query 10473 CTTTTGATAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 10531 | ||| | | | || ||| |||||| || ||||| ||||| || || || | |||||| Sbjct 1250 CGTTT-ACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGG 1308 Query 10532 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 10591 || || || || || | ||||| || ||||| |||||||| ||||| ||| | ||| Sbjct 1309 TCTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTT 1368 Query 10592 GTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT 10651 || || || | ||| | ||||| |||| |||| || | ||| | || | ||| | Sbjct 1369 GTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTA 1428 Query 10652 CGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACG 10711 | || ||||| || ||||||||||| | | || | |||||||| |||||||| || Sbjct 1429 AGAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACT 1488 Query 10712 TTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGAC 10771 ||||| || || |||||| | | ||||||||| || | |||||||||| || ||| Sbjct 1489 TTCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGAC 1548 Query 10772 CAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGA 10831 |||||||| |||| |||||| |||||||| || ||| | || | || || || || | | Sbjct 1549 CAACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 Query 10832 TA 10833 || Sbjct 1609 TA 1610 >seq288 Length=849 Score = 430 bits (476), Expect = 1e-115 Identities = 431/557 (77%), Gaps = 2/557 (0%) Strand=Plus/Plus Query 8257 TGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCA 8316 ||| ||||| || | || || || || |||| ||||| || ||| | ||||||||| Sbjct 294 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 353 Query 8317 ACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGAC 8376 || | | | ||||||| |||||||| | ||| || | ||||| ||||| || || Sbjct 354 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGAT 413 Query 8377 ATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCT 8436 |||||||| ||||| ||||||||||||||||| || | ||||| |||||||||||| || Sbjct 414 ATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACT 473 Query 8437 GGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCC 8496 ||||||||| |||| || |||||| | || || | ||||||||||| | |||||||| Sbjct 474 GGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCT 533 Query 8497 GCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTC 8556 || ||| | || |||||||| |||||||||||||||||||| |||||||| || |||||| Sbjct 534 GCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 593 Query 8557 CTCCTTGGCGT-CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCAT 8615 | | || || |||| || ||||| ||||||||||||||| ||||| | || || Sbjct 594 TTATTAGGTGTAGCTTGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 652 Query 8616 GCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCT 8675 |||||||||||| | || || | ||| ||||| || || || || ||||| |||||| | Sbjct 653 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTT 712 Query 8676 TGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTAC 8735 || || || | || |||||| |||||||||||||||||| | ||||| || ||||| Sbjct 713 AGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTAC 772 Query 8736 GTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACAT 8795 ||||||| ||| | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 773 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 832 Query 8796 GCTTGGTGTTGCTGGTG 8812 | |||||||||||||| Sbjct 833 GGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 8899 AACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGC 8958 ||||| || ||||| ||||| |||||||| |||||||||||||| || || || || || Sbjct 86 AACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 145 Query 8959 TACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTC 9018 |||||||| || || ||||||||||| || ||| ||||| ||| | || || ||| Sbjct 146 TACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCTCGTGCTTTACACTTC 205 Query 9019 TTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATG 9078 ||| | ||||| ||||| || || || |||||||| || || || || || || ||| Sbjct 206 TTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATG 265 Query 9079 GCTTTCAACCTCAATGG 9095 || |||||| | ||||| Sbjct 266 GCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 122 bits (134), Expect = 9e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9073 ACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGA 9132 || ||||| |||||| | ||||| |||||||||||||| || || | || | ||||| Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 9133 CGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATG 9192 || ||| ||||||| ||||| ||| | | ||||| || | | ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 9193 CACGAAAGAAACGCACACAACTTCCCGCTTGA 9224 |||||| | ||||| ||||||||||| || || Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 >seq22 Length=615 Score = 102 bits (112), Expect = 8e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 15402 CGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAA 15461 ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||||| Sbjct 63 CGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTCAAA 122 Query 15462 TCCTGTATTCCCGA 15475 |||||| |||||| Sbjct 123 TCCTGTCATCCCGA 136 >seq59 Length=1973 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 26435 ATAACTCAATCCCAAGTAGCTCAGTGGCAGAGCCGCCGACTGTTAATCGGCTGGTCGCTG 26494 |||| | ||||| ||||||||||||| ||||| || ||||||| || ||||||||| Sbjct 578 ATAAGTAAATCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTG 637 Query 26495 GTTCAAATCCAGCCTTGGGAGTTT 26518 |||||| |||||||| |||||||| Sbjct 638 GTTCAAGTCCAGCCTGGGGAGTTT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516326405304000