Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq2514 118 3e-22 >seq2514 Length=426 Score = 118 bits (130), Expect = 3e-22 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 1198 GAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCATATGGGTGGCATTCGGC 1257 || ||||| || || || ||||||||||| |||| | ||| |||||| | ||||| Sbjct 1 GAGGTGGCAGAAGGCGCCCTGACTGACGAAGACACAGTGATTATATGGATATGCTTCGGG 60 Query 1258 AACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTTCAAGCACCGGTGG 1317 ||||| |||| ||| |||| || ||| | ||||||||| | ||||| || ||||| Sbjct 61 AACCCCACGCAGAACTCAGGTCGCTTCAGAGAGTGCTTCAGGAAGTTTCGACATAGGTGG 120 Query 1318 AAGTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACAAGACCCAGCACCAGA-A 1376 | |||||| ||||| | || || |||||||||||||| |||| | | | | Sbjct 121 ATACACAAGCATATCGACAGTCGTACGGTCGAAGGCACCAACAAAGAACAGCTCGATAGA 180 Query 1377 GTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCCGTGTGCGCGGCATGTT 1436 ||| |||| |||| || ||||| ||| ||||| || ||||| |||||||| || Sbjct 181 ATGG-TTGAAGACTATGGCGAAGACAGCGATATCGTCAAAGTACGTGTACGCGGCATATT 239 Query 1437 CCCGAGGGCTTC 1448 ||| || || || Sbjct 240 CCCCAGCGCCTC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136444641022242