Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq54 138 7e-27 >seq54 Length=8408 Score = 138 bits (152), Expect = 7e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| | ||||| ||||| || || || |||||||| || |||||||| ||||| || Sbjct 1996 GTAACAAAGGCAGTTATTACAGTACCTGCCTATTTTAACGACTCTCAACGACAAGCGACA 1937 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| || || | || || ||| | | |||||||||||||||||||| ||||||||| Sbjct 1936 AAAGACGCAGGTAAGATCGCCGGTTTAGAGGTTTTACGTATTATTAATGAGCCAACAGCA 1877 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||||||||||||| | ||||| || Sbjct 1876 GCAGCACTTGCTTATGGTTTAGATAAAAA 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267158688576068