Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq18594 109 6e-19 >seq18594 Length=7120 Score = 109 bits (120), Expect = 6e-19 Identities = 247/367 (67%), Gaps = 12/367 (3%) Strand=Plus/Minus Query 160601 GAGCGATTTCAGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGC 160659 |||| |||||| |||| | || |||||| ||| | || | || || || || || | Sbjct 5082 GAGCACTTTCAG-TGCTCGTACCATCTCTGCGTTGCTTTTAATGGGCAAATCAGTCCCAC 5024 Query 160660 ACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAA 160719 | || | | ||||||||| | | | || || ||| || ||||||||||| | Sbjct 5023 AGGTATTGAGAAGGTACTTCCACTCCACACTGGAGTTTACCAGATCACTCATGCAATTGA 4964 Query 160720 TATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAA 160779 || || || || || ||| || || || || | |||| ||||||| |||| || Sbjct 4963 GGTCAGCTTGAACTCGAGACCAAGACGCATAGACAATACTCTCCCGTTTACTTGCCATAA 4904 Query 160780 AGACGTTATCGAAACACGACACGATTCCCACCACCGCC----AGAAAGAACATCTTAT-C 160834 |||| || |||||| || | ||| | |||| ||| |||||| || | Sbjct 4903 AGACATTCGGGAAACAAGAGATGATGGCTTCCACAGCCTCGGTGAAAGA-----TTGTGG 4849 Query 160835 CGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAA 160894 | ||| |||||| || || || || | |||||||| | ||| | |||||||| | Sbjct 4848 AGACTTCGTGTCCACATGTACACAGTATACATTCTGAGGTGTGTACGTAGCCCTGAGGAG 4789 Query 160895 CCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGT 160954 ||| || |||||||| |||| | |||||| || || || |||||||| ||||| || | Sbjct 4788 CCTTTCAAACATCTCAATCTGCTCATGGATTACCATCGAATAGGCTATAGGAAAGTCTCT 4729 Query 160955 CTCCTCG 160961 ||||||| Sbjct 4728 CTCCTCG 4722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577047542225160