Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq566 569 2e-157 seq288 407 2e-108 seq620 214 2e-50 seq49 150 2e-31 seq22 91.5 2e-13 >seq566 Length=2184 Score = 569 bits (630), Expect = 2e-157 Identities = 739/1011 (73%), Gaps = 8/1011 (1%) Strand=Plus/Plus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 162189 CCCA-CTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 162247 |||| | || | |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 162248 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAG 162306 |||||| || ||| | || ||| || || || || ||||| ||| | |||| || | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAA-CTTCTTAACTGTAGCGG 781 Query 162307 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 162366 | || || || ||| || |||||||||||| | | | ||||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 162367 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 162426 |||| || |||| || ||| ||| |||| ||| | ||| ||||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 162427 GAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGT 162485 | || |||| | || || ||| || || || || || || | || || ||| | ||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 162486 ATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTT 162545 |||||||| || || || ||||| ||||| || |||||||| ||||||||| ||| || Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 162546 CTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCA 162605 | ||||||||| | |||||| | ||||||||||| || || ||||| ||||| Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 162606 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCAC 162665 || ||||| ||| | | ||| | ||||| |||||||||||||| || || || || || Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 162666 ATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACA 162725 ||||||||||||||||| || | ||||||||||| | ||||| |||||||||| || Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 162726 GTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCC 162785 || ||||| ||||| | |||||||| || |||||||| || || ||| || || Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTT-ACACC 1259 Query 162786 -ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTT 162844 ||||| |||||||| ||||| ||||| || ||||| | |||||||| || ||||| Sbjct 1260 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 1319 Query 162845 CGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCAT 162904 |||| | ||||| |||||| |||||| | || ||||| ||| | |||||||| || | Sbjct 1320 CGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAAC 1379 Query 162905 GGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGA 162964 ||| | |||||||||||| | |||||| | || | || | ||| | | || ||||| Sbjct 1380 AGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGA 1439 Query 162965 CTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAA 163024 ||| |||||||||||| ||||||| || ||||| || || ||||| || ||||| || || Sbjct 1440 CTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 1499 Query 163025 GAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGA 163084 || || | | || ||||| || || ||||| | || || |||||||| ||||| Sbjct 1500 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGA 1559 Query 163085 GAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTATGATA 163135 |||||||| ||||| || ||||| || ||| | || ||||| || | ||| Sbjct 1560 AAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 1610 >seq288 Length=849 Score = 407 bits (450), Expect = 2e-108 Identities = 427/558 (77%), Gaps = 4/558 (1%) Strand=Plus/Plus Query 160885 TGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCC 160944 ||| |||| ||||| || ||||| | || | ||||||||||| || | ||||| || Sbjct 294 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 353 Query 160945 TGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGAC 161004 || | | ||||| | || |||||||| || || | | ||| || || || || Sbjct 354 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGAT 413 Query 161005 ATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCT 161064 |||||||| || |||||||| || ||||| || || | || ||||||||||||||| || Sbjct 414 ATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACT 473 Query 161065 GGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCA 161124 ||||| ||||| ||| ||||||| |||||||| | ||||||||||| | |||||||| Sbjct 474 GGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCT 533 Query 161125 GCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTC 161184 || | | ||||| ||||| |||||||||||||||| |||||| || || || |||||| Sbjct 534 GCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 593 Query 161185 CTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAA 161242 | | || | || |||| ||||||| ||||| ||||||||| |||||| | || | Sbjct 594 TTATTAGGTGTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGA 651 Query 161243 TGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCC 161302 ||||||||||||||| |||||| | ||| ||||| || |||||||| |||||| ||| Sbjct 652 TGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCT 711 Query 161303 TGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTA 161362 | || || || |||| |||||| |||||||||| |||||| | || || ||||||| Sbjct 712 TAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTA 771 Query 161363 CGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATA 161422 | ||||||| |||| | || ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 772 CTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATA 831 Query 161423 TGCTCGGCGTAGCAGGTG 161440 || || || || |||| Sbjct 832 TGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 214 bits (236), Expect = 2e-50 Identities = 220/285 (77%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 161442 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCG 161501 |||||| || ||| | |||||||| ||||||||||| || || || ||| | | || Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 161502 TGAAACCACCGAAAACGA-GTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGA 161558 |||||| ||| ||| || | | ||||| |||||||| ||||| ||||||||||| Sbjct 61 TGAAACT---GAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 161559 GACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTC 161618 || ||||||||||| ||||| ||||| ||||| || ||| | || ||||||||||| Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 161619 CTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTG 161678 ||||||||||| || | | ||||||||| | ||||||||||| ||||| || ||||| Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 161679 GTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGG 161723 ||| ||||| || || || || || |||||||||||| | ||||| Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 150 bits (166), Expect = 2e-31 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 161695 GTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGT 161754 || || || |||||||||||| | |||||||||||||||||||| || | |||||||| Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 161755 CAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAA 161814 || || || |||||||| ||||| ||| || |||||||||||| | | || |||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 161815 GTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGA 161852 || |||||||| || || || |||||||||||||| || Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 >seq22 Length=615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||| |||||||||| ||||||||||| ||||||||||||| | ||| ||||||| | Sbjct 62 ACGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTCAA 121 Query 157749 ATCCTGTCACCCCGACTTAT 157768 ||||||||| ||||| |||| Sbjct 122 ATCCTGTCATCCCGA-TTAT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547584306829560