Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq288 334 2e-87 seq620 95.1 4e-15 seq49 91.5 4e-14 >seq288 Length=849 Score = 334 bits (370), Expect = 2e-87 Identities = 410/557 (74%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 18255 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACG 18314 || |||||||| ||||||||| || |||||||| || |||||||| ||||||||||| Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 18315 AACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 18374 |||||||| ||||||||||| |||||| | |||||||||||||||||| || |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 18375 CCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACA 18434 || | || ||||| | ||||||| | || || |||||||| || || |||| || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 18435 CAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCT 18494 ||||||| || ||||| |||| | || ||||||||||||| ||||||||||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAA 608 Query 18495 GCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 18554 || | || | | ||||| || || | ||||| || || || ||||| || | |||| Sbjct 607 GCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCAC 548 Query 18555 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 18614 ||||| | | ||||||||||| | |||||||||||||| |||||| | |||||| Sbjct 547 TCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAACTA 488 Query 18615 GGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCA 18674 || | | ||| || | |||||||||||||| || | | | ||| | || || ||| Sbjct 487 GGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTTCA 428 Query 18675 CGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA--AAAATGC-TGTA 18731 || ||||| || || ||||| ||||| ||||| | ||| || || | || || |||| Sbjct 427 CGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTGTA 368 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 ||| ||||| | || |||||||| | || || ||||| || | ||| | ||||| Sbjct 367 GCT---GTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTT 311 Query 18792 TTTGTACTCGTAACCCA 18808 | ||| || || | ||| Sbjct 310 TCTGTGCTAGTGATCCA 294 >seq620 Length=282 Score = 95.1 bits (104), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| |||||||| |||| | | ||||| || || || || ||| Sbjct 225 ACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGG 166 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | | |||||||| || || || || || || || || || ||||||||||| Sbjct 165 AAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGT 106 Query 18147 CCAAATTTATATCCATAGTT--CTGAGACTCAAGC-TCAGTCGTTTCTCTAATAAGTGAG 18203 || ||||| || || ||||| | || || | | ||| ||||| | || | Sbjct 105 CCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTA 49 Query 18204 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || |||||| |||||||||||| |||||||| ||||| || Sbjct 48 GATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 91.5 bits (100), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 ||||||||||| |||||||| || || ||||| |||||||| ||||| | || | | | Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 2042 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCT-GCTACAATGGA 17953 || | ||||| | ||||||||| || | || | ||| ||| | |||| || Sbjct 2043 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCT-TGGCTATCAACAACCGA 2101 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGT 17992 ||||||||||||||| ||||| | || || |||||||| Sbjct 2102 TTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151275649809354