Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq566 605 4e-168 seq288 426 2e-114 seq620 152 7e-32 seq49 143 3e-29 seq70 82.4 1e-10 >seq566 Length=2184 Score = 605 bits (670), Expect = 4e-168 Identities = 752/1022 (74%), Gaps = 6/1022 (1%) Strand=Plus/Minus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || ||||| || | ||| || ||||| || || ||||||||||||||||| ||| Sbjct 1610 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAGTTTTCATGTGGT 1551 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 || || || |||| ||||| | | |||||| || |||| ||| || || |||||| Sbjct 1550 TGGTCTTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTGTAG 1491 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || || ||||||||||| ||||| | | ||||| ||||| ||||| || || Sbjct 1490 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGTTCTTGAGATACGAAGTCGTATGCT 1431 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 | | || | || | ||| | |||||| | ||||||||||| | ||| | || ||| Sbjct 1430 CTTAAATTTAATGCTAAACCTACAATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 1371 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | ||| ||||| || | ||| | || ||| || || | ||| || |||||| Sbjct 1370 ACAAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCTACACCGAAAATTTGA 1311 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 |||||||| | || ||||| |||||||||||||| ||||| |||||| | || Sbjct 1310 GACCAGAATCTATTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTAAAC 1251 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||| |||||||| ||||||||||||| | || ||||| || ||||| | || Sbjct 1250 GCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTGTTTTCTACAGTAGCTCCA 1191 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || ||||| || | | ||| || || | || ||||| || |||||||||||||||||| Sbjct 1190 TGAATTGCAGATAATAATGCACCACCTAAAATCCCTGCTACGCCCATCATATGGAATGGG 1131 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || || |||||||||||||| || |||| ||| | || ||| | || || |||||||| Sbjct 1130 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAGAAGCGGAAAATAGCTGCAACC 1071 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || || ||||||||||| | ||||| ||||||||||| | || ||| Sbjct 1070 CCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATAGATTAAGAATACAGAA 1011 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 || || || || ||||| |||||||| ||||| || || || |||||||| || | | Sbjct 1010 ACGAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTATATGGACGAATACCTACAAGA 951 Query 102364 CTAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 | ||| | |||||||||||| || || ||| ||||| | |||||||||| || | || Sbjct 950 CGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAAACCAAATGCACCATGTAATGC 892 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 | ||||||||| | ||| |||| ||| | ||| | |||||||||||| |||||||| Sbjct 891 GATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAATCTCCTTGTGCTTCAGG 832 Query 102483 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 ||||| | || || | |||||||||||| || ||||| ||||| || || | || Sbjct 831 TCCCCATAATAAAATTAAGGAATGACCCATACTGTTTGCAGGTGTTGATACCGCTACAGT 772 Query 102543 AAGGAAATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAG 102601 | ||| || ||| ||||| |||||| ||| || | || || |||||||| || ||| Sbjct 771 TAAGAAGTT-GCATCCTTCTAGGTAAGAAGATGCTAATCCATGTGTATACCAAGATGTAA 713 Query 102602 CAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT-GGGAAAAAGAAGT 102660 |||| ||||| || || | ||| || |||| ||| ||| | || || ||||| || || Sbjct 712 CAAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGGAATAATAAA- 654 Query 102661 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCA 102720 || || |||||||| | ||| || || ||||||||||| | ||||||||| | | |||| Sbjct 653 AGGCCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCA 594 Query 102721 AA 102722 || Sbjct 593 AA 592 >seq288 Length=849 Score = 426 bits (472), Expect = 2e-114 Identities = 423/544 (78%), Gaps = 4/544 (1%) Strand=Plus/Minus Query 103595 CCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACC 103654 |||||||| || ||| ||||| |||||||| |||||||| ||||| |||||||| || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 103655 AGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGA 103714 | |||| ||||||| || || |||||||| ||||||||| |||| ||||| |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 103715 CCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACA 103774 || | ||||| || ||||||||||| || || || || || ||||| ||| | || || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 103775 CAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCA 103834 | ||||| || ||||| || | ||||||| | |||||| ||||||||||| || ||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA 609 Query 103835 TAGATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCC 103892 || | | | | | |||||| ||||||||||||||| ||||||||||||| || |||| Sbjct 608 -AGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 550 Query 103893 ACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGG 103952 |||| || | ||| || |||||||||| || |||||||||| ||| || | ||| || Sbjct 549 ACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAAC 490 Query 103953 AGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTT 104012 |||| ||||||||||| |||||||||||| ||||| | ||||| ||||| || |||| Sbjct 489 TAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTT 430 Query 104013 CACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGATGG 104072 |||| || ||||||||||| || |||||||| || | ||||| | |||||||||| | | Sbjct 429 CACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTG 370 Query 104073 TTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGT 104132 | || | || | ||||||||||| | |||||||||||||| | || | |||||| | Sbjct 369 TAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTT 310 Query 104133 TTGT 104136 ||| Sbjct 309 CTGT 306 >seq620 Length=282 Score = 152 bits (168), Expect = 7e-32 Identities = 200/284 (70%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 103310 CCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACCCACTACT 103369 || || | |||||| ||||| || ||||||||||| || || ||||||||||| || ||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 103370 GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGGAAG 103429 || | ||||||||||| |||||||||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 103430 ATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCG 103489 || ||||| || |||||||| || || |||||||||||||| || ||||| ||||||||| Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 103490 AACTTGTAACCATAGTTTTGAGAT--TCAGT-TTCAGTCGTCTCACGAACCAGCGAGGAC 103546 || |||||||| ||||| |||| | || |||| || ||||| | | || Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTAGAT 46 Query 103547 GTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAA 103590 || ||||| |||||||||||||||||||| | || ||||| || Sbjct 45 GTTACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 143 bits (158), Expect = 3e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || ||||||||||| |||||||| |||||||| ||||||||||| | | |||| ||| Sbjct 1989 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 2048 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 |||| || ||| ||||| ||||| | ||| || || || | ||||| | || |||||| Sbjct 2049 TTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGATTGGTTG 2108 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACA 103339 |||||||| || || | |||||| ||||| || |||||| Sbjct 2109 AAGTTGAAACCATTTAAGTTGAATGCCATAGTACTAACA 2147 >seq70 Length=3096 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 102875 AGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAA 102934 |||||| |||| || |||||| | |||||| | ||| ||||||||||| ||| Sbjct 6 AGAAAG-ATTGCTCAGATTGATCAATAGTACCGCCTACAACACGGCCAGCACAAGTTGAA 64 Query 102935 CACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGA 102994 || | ||| | | || |||||||| || |||| || ||| ||||||||||||| | Sbjct 65 CAAGAACCTGATCTGCAAGAATAAGGTAGTTCAAATCCATTTTCTTCAGCAGCGTCTAAA 124 Query 102995 ATATATTGATCATCCTCACAGGTGATA 103021 || |||| ||||| |||||| |||| Sbjct 125 ATGTATTCGTCATCATCACAGTCGATA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633325200974280