Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq288 306 1e-78 seq620 170 6e-38 seq49 109 2e-19 >seq288 Length=849 Score = 306 bits (338), Expect = 1e-78 Identities = 413/573 (72%), Gaps = 2/573 (0%) Strand=Plus/Minus Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| ||| || || || ||||||||||| ||||| || || ||||| || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| ||||||| || || || || || || |||||| ||||||| || || ||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 || | || ||||| | ||| || |||| || || || || ||||| ||| | || || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 || ||||| || | |||||||| || |||||||||||||| || ||||||||||| ||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA 609 Query 22131 AAG-ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCA 22189 | || || | | |||||| ||||| |||||| | ||||| |||||||| ||||| Sbjct 608 AGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCA 549 Query 22190 TTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCT 22249 || || | | ||||||||||||| |||||||||||| | ||||| | ||| || Sbjct 548 CTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAACT 489 Query 22250 CGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTC 22309 |||| || || || | ||||||||||| || || || || || ||||| || ||||| Sbjct 488 AGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTTC 429 Query 22310 TCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGT 22369 ||||| || ||||| ||||| || ||||| | | ||| ||||| || || || |||| Sbjct 428 ACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTGT 369 Query 22370 AGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 ||| | | | || ||||| | || |||||||| || | || | |||||| | Sbjct 368 AGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTC 309 Query 22430 AGTAGAGGTGACCCAGGAACAAAACTGCTCCCA 22462 || |||| ||| || || || ||||||| Sbjct 308 TGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 276 >seq620 Length=282 Score = 170 bits (188), Expect = 6e-38 Identities = 209/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 21606 CCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACA 21665 ||||| |||||||| ||||| ||| || ||||| |||| ||||| ||||||||||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 21666 GGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAG 21725 ||||| ||||| | ||||| || | | ||| || || || || || || ||||||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 21726 ATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCA 21785 || | || ||||| || ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 21786 AACTTGTAACCATAGTTCTGTGAAA---CCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 || |||||||| ||||| || | | |||||| || ||||| || | || Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTAGAT 46 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAA 21886 || || || ||||||||||||| ||| ||| ||||||||| Sbjct 45 GTTACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 109 bits (120), Expect = 2e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || ||||||||||| ||||| || || ||||| || || | || | | |||||| Sbjct 1989 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 2048 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | |||||||||||| ||||||||||| | || | | | | | |||||||| Sbjct 2049 TTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGATTGGTTG 2108 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTA 21629 |||||||||||||| |||||||| ||||| ||| Sbjct 2109 AAGTTGAAACCATTTAAGTTGAATGCCATAGTA 2141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146166693589980