Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq566 554 5e-153 seq288 389 5e-103 seq620 203 4e-47 seq49 109 6e-19 >seq566 Length=2184 Score = 554 bits (614), Expect = 5e-153 Identities = 757/1051 (72%), Gaps = 27/1051 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || |||||||||||||| || ||||| ||||| Sbjct 1608 TTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAGTTTTCATGTGGTTG 1549 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATT-AAGAAGAATGTTCTTCGTATAGA 122984 ||| | | |||||||| ||| || ||||| || || |||| | || || || |||| Sbjct 1548 GTCTTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGA-TATTTTTAGTGTAGA 1490 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 |||| || || ||||| ||||| ||||| | | ||||||||||| ||||||||||||| Sbjct 1489 AAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGTTCTTGAGATACGAAGTCGTATGCTC 1430 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | | || | ||||| |||||| ||||| | ||| |||||| | ||| | || |||| Sbjct 1429 TTAAATTTAATGCTAAACCTACAATACCAAAAGAACTTGTCCATAAACCTGTTACTGGAA 1370 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || ||||| | |||||| | | | ||||||||| || || | ||| || || || | Sbjct 1369 CAAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCTACACCGAAAATTTGAG 1310 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 |||||||||| |||||||| | ||| ||||||||||||| ||||| || || | Sbjct 1309 ACCAGAATCTATTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTAAACG 1250 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || | ||| | | | | || |||||| | | || Sbjct 1249 CACGGAATGT----GTTTGCAGCATCAC--CA---------------TCTTCAAATAGTG 1211 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 |||| | || || || |||||||| ||| ||| |||||| ||||||| || ||||| | Sbjct 1210 TGTTTTCTACAGTAGCTCCATGAATTGCAGATAATAATGCACCACCTAAAATCCCTGCTA 1151 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 | |||||||| || ||||| || | ||| ||| ||||||||||||| |||||| | Sbjct 1150 CGCCCATCATATGGAATGGGTTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAGA 1091 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCT-GACCTAGT 123463 | || || || ||||| || || || ||| |||||||||||||| |||| | ||||| Sbjct 1090 AGCGGAAAATAGCTGCAACCCCAAAACTTGGAGCGAAGAACCAACT-TGCTTGTCCTAGA 1032 Query 123464 GGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTG 123523 |||||||| | || | | ||| || || ||| |||||||||| | |||||| Sbjct 1031 GGATAGATTAAGAATACAGAAACGAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTA 972 Query 123524 TAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTATGAG 123582 || || | ||| |||||||| | |||||||| ||||| | | | || ||| || || | Sbjct 971 TATGGACGAATACCTACAAGACGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAA 913 Query 123583 TCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAAC 123642 ||||| | ||||||||||| | ||| ||||| || || | ||| | ||||||| Sbjct 912 ACCAAATGCACCATGTAATGCGATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGT 853 Query 123643 GAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACC 123702 ||| ||||||||||||||||||||| | || || | ||||||||| || | Sbjct 852 GAAATCTCCTTGTGCTTCAGGTCCCCATAATAAAATTAAGGAATGACCCATACTGTTTGC 793 Query 123703 AGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACC 123762 |||||| || || ||| | ||||||||||| ||| || || || |||||||| | || Sbjct 792 AGGTGTTGATACCGCTACAGTTAAGAAGTTGCATCCTTCTAGGTAAGAAGATGCTAATCC 733 Query 123763 ATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATA 123822 |||||||||||| |||||||| || || || ||| ||||| ||||| | || ||| | Sbjct 732 ATGTGTATACCAAGATGTAACAAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAA 673 Query 123823 CGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 || || | | |||||| || ||||| || || ||||| |||||||||| ||||| Sbjct 672 TGCTGTTGGGAATAATAAAAGGCCTGACCAACCAATAAATACGAAACGATCTCGTTTTAA 613 Query 123883 CCAGTCGTCAAGAACATCAAACCAACCTCTT 123913 |||||| || | | ||||| |||||||| Sbjct 612 CCAGTCATCGACTAAGTCAAATAAACCTCTT 582 >seq288 Length=849 Score = 389 bits (430), Expect = 5e-103 Identities = 401/522 (77%), Gaps = 2/522 (0%) Strand=Plus/Minus Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || || || || ||||| ||||| || ||||| |||||||| || ||||||||||| || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 ||||| |||||||||||||| || ||||| | ||||||||||||||||| ||| || Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| ||||||||||| || |||| |||| |||||| ||||| |||| || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 | |||||||||||||| ||||| | ||| |||||||| | | ||||||||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAA 608 Query 124709 GAAATACC-AATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCA 124767 | | ||| |||||| ||||| || | ||| | || ||||||||||| || || | ||| Sbjct 607 GCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCA 549 Query 124768 TTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGA 124827 || || | || || |||||||| | |||||||||||| | ||||||| ||| || Sbjct 548 CTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAACT 489 Query 124828 TGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTC 124887 |||| ||||||||||| |||||||||||| || ||||| | || || || |||||||| Sbjct 488 AGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTTC 429 Query 124888 TCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGC 124947 | ||| ||||||||||| || |||||||| || ||||| || | |||||| || || Sbjct 428 ACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTGT 369 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACC 124989 ||||| | ||| ||| ||||||| |||||| |||||||| Sbjct 368 AGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACC 327 >seq620 Length=282 Score = 203 bits (224), Expect = 4e-47 Identities = 214/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 124184 CCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATACAACA 124243 ||||| |||||||||||||| || | | ||| | || |||||||| | || |||||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 124244 GGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAG 124303 || || | |||| ||||||||| | | | ||||||||||| || || |||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 124304 ATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCG 124363 || | ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 124364 AACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTA 124423 || || ||||| ||||| || | ||| ||||| | ||||| | |||||| Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACGGATTAAACTAGATGTT 43 Query 124424 ACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAAC 124465 ||||||||||| ||||| || ||||||||| || || ||| Sbjct 42 ACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAAC 1 >seq49 Length=2147 Score = 109 bits (120), Expect = 6e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| ||||| ||||||||||| || || | ||| ||||| ||||||||||| || | Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 2042 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | || ||| |||| || || | || || || ||||||||| || Sbjct 2043 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCC-TTGGCTATCAACAACCGA 2101 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGT 124206 |||||| |||||||||||||| |||||||||||||| || Sbjct 2102 TTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578826213113320