Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq566 462 3e-125 seq288 446 2e-120 seq620 190 3e-43 seq49 102 1e-16 seq420 84.2 3e-11 >seq566 Length=2184 Score = 462 bits (512), Expect = 3e-125 Identities = 694/978 (71%), Gaps = 6/978 (1%) Strand=Plus/Minus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAA 23488 ||||||||| ||||||||||| | ||||||| | | || | ||| || || Sbjct 1566 AAAGTTTTCATGTGGTTGGTCTTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAA 1507 Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 |||||||| |||||||| || ||| | ||||||||| ||||||| |||||| Sbjct 1506 GATATTTTTAGTGTAGAAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGTTCTTGAGA 1447 Query 23549 CACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCA 23608 || || || || || | | ||| | || | || | || |||| |||| ||| Sbjct 1446 TACGAAGTCGTATGCTCTTAAATTTAATGCTAAACCTACAATACCAAAAGAACTTGTCCA 1387 Query 23609 AAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGC 23668 | ||| | || |||||||| ||||| |||||||| | |||||| || || || || Sbjct 1386 TAAACCTGTTACTGGAACAAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGC 1327 Query 23669 AACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTC 23728 || ||||| ||||| ||||| || | ||| ||||| ||||| ||||| || || || Sbjct 1326 TACACCGAAAATTTGAGACCAGAATCTATTCGCTGTTACCATTGAATAAGTTTCTTCTGA 1267 Query 23729 CTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATT 23788 || || | ||||| || |||||||| || ||||||||| | ||||| || Sbjct 1266 TTGTGTTGGTGTAAACGCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTGTT 1207 Query 23789 CTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCC 23848 || |||||| |||||||||| ||||| | | ||| || || | || || || || || Sbjct 1206 TTCTACAGTAGCTCCATGAATTGCAGATAATAATGCACCACCTAAAATCCCTGCTACGCC 1147 Query 23849 CATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCT 23908 |||||||||||| ||||| || ||||||||||| || || || | ||| | | ||| | Sbjct 1146 CATCATATGGAATGGGTTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAGAAGCG 1087 Query 23909 GAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATA 23968 |||||| || ||||| || ||||| || || ||||||||| || ||||| | |||||| Sbjct 1086 GAAAATAGCTGCAACCCCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATA 1027 Query 23969 GATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGG 24028 ||| | ||||||||| |||||||| |||||||| ||||| || ||||| || || || || Sbjct 1026 GATTAAGAATACAGAAACGAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTATATGG 967 Query 24029 ACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAA 24088 ||| || || | ||||| || | || || |||||||| || || || | |||| Sbjct 966 ACGAATACCTACAAGACGAGCGATCTCGAATTGACGTAAACAGAATCCAATTAAACCAAA 907 Query 24089 GGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGT-TGAAAGT 24147 ||||| || | || | ||| | ||| | || |||| ||| ||||| || ||||| | Sbjct 906 TGCACCATGTAATGCGATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAA-T 848 Query 24148 CCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCG 24207 | ||||| | ||||| ||||| | || || | |||||||||||| || ||||| | Sbjct 847 CTCCTTGTGCTTCAGGTCCCCATAATAAAATTAAGGAATGACCCATACTGTTTGCAGGTG 788 Query 24208 TCGAGACAGCTGCCGTAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGG 24266 | || || ||| | || | ||||| ||| || || || || ||| || | |||||| Sbjct 787 TTGATACCGCTACAGTTAAGAAGTT-GCATCCTTCTAGGTAAGAAGATGCTAATCCATGT 729 Query 24267 GTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326 || |||||| |||||||||| || || || | ||| || |||| |||||| | || Sbjct 728 GTATACCAAGATGTAACAAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCT 669 Query 24327 G-TGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCA 24385 | |||||| || || || || |||||||| | ||| || || ||||| ||||| | ||| Sbjct 668 GTTGGGAATAA-TAAAAGGCCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCA 610 Query 24386 GTCGTCCAAGATGTCAAA 24403 ||| || | | |||||| Sbjct 609 GTCATCGACTAAGTCAAA 592 >seq288 Length=849 Score = 446 bits (494), Expect = 2e-120 Identities = 424/538 (79%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 27154 CCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACA 27213 ||||||||||| ||| ||||| ||||||||||| || ||||||||||| |||||||| Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 27214 AGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGA 27273 | |||| |||| ||||||||||| ||||| | ||||||| |||| ||||| |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 27274 CCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACA 27333 |||| || || || | |||||||||| || ||||| |||||||| || | ||||| Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 27334 CAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCA 27393 | ||||| |||||||| |||||||| || |||||||| ||||||||||| || ||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA 609 Query 27394 TAGATGCCGATAAG--GAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACC 27451 || | | ||| |||||| || ||||| |||||| ||||||||||||| || | || Sbjct 608 -AGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 550 Query 27452 ACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAAC 27511 |||| || | || || |||||||| | |||||||||||| | |||||| | || |||| Sbjct 549 ACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAAC 490 Query 27512 TTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTT 27571 | || | ||||||||||| ||||||||||| || || | |||||| |||||||| |||| Sbjct 489 TAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTT 430 Query 27572 CACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAG 27631 |||| |||||||| ||||| || || ||||| ||||| || |||| ||||||||| | Sbjct 429 CACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTG 370 Query 27632 TTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 | |||| ||| | |||||||||||| | |||||||||||||| | || |||||||| Sbjct 369 TAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 312 >seq620 Length=282 Score = 190 bits (210), Expect = 3e-43 Identities = 209/275 (76%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 26878 TTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGCCATGCA 26937 ||||| ||||| || |||||||| || || |||||||| || ||||| ||||| ||| Sbjct 273 TTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACTGGCCAAGCA 214 Query 26938 GCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGA 26997 || | ||||||||| || | ||| ||||||||||| || ||||||||||| ||||| Sbjct 213 GCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAGATTAAACGT 154 Query 26998 CCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAA 27057 || ||||| || ||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 153 CCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAA 94 Query 27058 CCATAGTT--CTGTGACTCAGT-TTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGA 27114 || ||||| | | || | || |||| || ||||||| | |||||| || ||| Sbjct 93 CCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTAGATGTTACAAGA 37 Query 27115 CTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 |||||||||||| ||| | ||| ||||| || Sbjct 36 GAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | |||||| || || || | || | | |||||||||||| | Sbjct 1995 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATA 2054 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||| ||||||||||||| ||| || || || ||||| || || || ||||||||| Sbjct 2055 ATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGATTGGTTGAAGTTG 2114 Query 26866 AAACCGTTGAGATTGAAAGCCATCGT 26891 ||||| || | ||||| ||||| || Sbjct 2115 AAACCATTTAAGTTGAATGCCATAGT 2140 >seq420 Length=810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 53415 TCCGGACTCGAACCAGAGACCTCACCGTTATCAGCGGTGTGCTCTAACCATCTGAGCTA 53473 || ||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||| Sbjct 671 TCTGGACTTGAACCAGAGACCTCACCCTTATCAGGGGTGTGCTCTAACCAACTGAGCTA 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665296490284120