Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7782 190 2e-43 seq17508 143 3e-29 seq673 125 9e-24 seq13862 91.5 2e-13 >seq7782 Length=16676 Score = 190 bits (210), Expect = 2e-43 Identities = 588/901 (65%), Gaps = 19/901 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAAC 75185 ||||||| || | | ||||| || |||| ||||| |||||| ||| || |||| Sbjct 6225 CGGGACTTCGACTACGACTACTTCGGCTTCAAGACCCTGGAGAAGTCCTACCTGCTCAA- 6283 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | || |||||| ||||||| ||| ||| ||||| ||||||| || || ||||||| Sbjct 6284 -GATGGACGGCATCGTCATGGAGCGCCCCCAGCACATGATCATGCGCGTGGCCATCGGCA 6342 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 ||||| ||| ||| | || | | | | ||||| || || ||||||||| | | Sbjct 6343 TCCACAAGGAGGACGTCGACGCCGCCATCGAGACCTATAACCTCATGTCCCAAAAGCTCT 6402 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTT 75365 ||| || || || || ||||| ||||| || || || || | |||||| | ||| | Sbjct 6403 TCACGCATGCCACTCCCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCCT 6462 Query 75366 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 75425 ||||||| || ||| ||||||||||| ||| | || ||||| | || || | | | | Sbjct 6463 GCTTCCTCCTCACCATGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAAT 6522 Query 75426 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 | || ||||| || | || || || || || || |||||| | | | ||| Sbjct 6523 GCGCCGCCATCTCCAAATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCCC 6582 Query 75486 ATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 | | || || || || | || ||| || | ||||| | || ||||| || | Sbjct 6583 GTGACTCCTACATCCGCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTG 6642 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG---TCGCAAGGGGTCCATCG 75602 | || |||| ||| || ||||| || | || | |||| | |||||||| ||| ||| Sbjct 6643 TCTTCAACGACACGGCCCGCTACGTGGACCAGGGGGGGGGAAAGCGCAAGGGCTCCTTCG 6702 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662 | | ||| | || || ||||| ||||| ||| | ||||||||||| | || || | Sbjct 6703 CCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAATC 6762 Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 | || |||| || || | || || |||| |||| |||| || || | | Sbjct 6763 ACGGCAACGAGCTGGAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTGT 6822 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 ||||| |||| || ||| | | ||| | ||||| || || || || | || || | Sbjct 6823 TCATGCAGCGCGTGGAGAACGACGGTGACTGGTCCCTGTTTTGCCCCAATGAGTGCCCCG 6882 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGC-CCTCTACACAAAGTATGAAGAG-GA 75840 | | | |||| | || |||||| || |||| |||||| ||| || || | Sbjct 6883 GCTTGGCGGACGTGTGCGGGGAGGAG-TTCAAGCAGCTCTACGAGTCGTACGAGAAGAGC 6941 Query 75841 GGGTAG--AGCCAATGCGA--CTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAAT 75896 ||| || | ||| | || | ||| | || | ||| || | | | | Sbjct 6942 GGGAAGGCACGCAAGGTGATCAAGGCCCAACAGC-----TGTGGTTCGCCGTGTTGGACT 6996 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | ||| |||||| || || || || ||||| | ||||| ||||| ||| ||| | Sbjct 6997 CCCAGGTGGAGACGGGCACGCCCTACATGCTGTTTAAGGACGCTTGCAACCTCAAGTCGA 7056 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 |||| ||||| |||| |||||| ||| || ||||||||||| || | ||||||| Sbjct 7057 ACCAGCAGAATCTGGGGGTGATCAAGTCCTCCAACCTTTGCACGGAGATCATCGAGTACA 7116 Query 76017 C 76017 | Sbjct 7117 C 7117 >seq17508 Length=3941 Score = 143 bits (158), Expect = 3e-29 Identities = 371/558 (66%), Gaps = 7/558 (1%) Strand=Plus/Plus Query 75522 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG-CG 75580 ||||| | | || ||||| || || ||| ||| || ||||| ||||| |||| | || Sbjct 2433 ATGGTTTAGTGCCGATGCTGCGTGTGTTTGACGTGACGGCGCGATATGTTGATCAGGGCG 2492 Query 75581 GGGCGTCGCAA--GGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGG 75638 ||| | || |||| || | ||| | ||| | || || |||||||| ||||| | | Sbjct 2493 GGGGGAAGCGGCCGGGGGCCTTTGCGATTTACATTGAGCCGTGGCATGCGGATATTTTTG 2552 Query 75639 AGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTT 75698 || | ||||| || | || || || | |||||||| ||| | ||||| || | Sbjct 2553 AGGTGCTTGACTTGAGGAAAAATCATGGGAAGGAAGAGGCGCGGGCGCGTGATCTGTTCT 2612 Query 75699 CATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTC 75758 |||||||| || || | || |||||| |||| ||||||| ||| ||||| Sbjct 2613 ATGGGCTGTGGATCCCTGATTTGTTTATGAAGAGGGTGGAGGAGGATGGGGTGTGGTCGT 2672 Query 75759 TTTTCTGTCCAGA-CAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGC 75816 | | ||||| || ||| || || || | |||| || ||| ||| ||| || || Sbjct 2673 TGATGTGTCCCGATCAATGC-CCTGGCTTGGGCGACTGCCATGGCA-AGGCGTTCGAGGC 2730 Query 75817 CCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGT 75876 ||| ||| | |||||| | | ||| |||| ||| || || | || || | Sbjct 2731 CCTGTACCTGCAATATGAAAAAGCGGGAAGAGTCAAGAAAACCGTGCGTGCGCAAGACCT 2790 Query 75877 TTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGA 75936 ||| || ||| | | ||||||| ||||| || || || ||||||||||| || || Sbjct 2791 GTGGTTCGCGATTTTGGACTCACAGATCGAGACGGGCACGCCGTATATGCTTTATAAAGA 2850 Query 75937 TGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTG 75996 || ||||| |||||||||||| ||||| | || || || || || || | || Sbjct 2851 CGCGTGTAATCTGAAGAGTAACCAGCAGAATCTAGGGACGATTCGCAGTTCGAACTTGTG 2910 Query 75997 CACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAAT 76056 ||||| ||| | |||| || ||| ||| |||||| || |||||||| || | Sbjct 2911 TACGGAGATTATCCAGTATACGAGCCCGGAGGAGGTGGCTGTGTGTAATTTGGCTTCGGT 2970 Query 76057 CGCCCTTCCAAAGTATGT 76074 || ||| || |||| ||| Sbjct 2971 CGTCCTGCCTAAGTTTGT 2988 >seq673 Length=1750 Score = 125 bits (138), Expect = 9e-24 Identities = 324/493 (66%), Gaps = 12/493 (2%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || || || | | ||||| || || |||| ||||| ||| | || Sbjct 485 TGATGTTGCTGGTATCGATGAAGTTAAAGAAGAGTTTCAAGAAATTGTTACTTTCTTAAA 544 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | |||| || | ||| | |||||| || || || ||| | ||| | | || Sbjct 545 GAAACCTGAACGTTATACACGTGTTGGTGCAAAAATTCCAAAAGGTGTCCTATTATCAGG 604 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || || || || | | || || ||||||||||| |||| || || Sbjct 605 TCCTCCAGGGACAGGTAAAACTTTATTAGCTAAGGCTATCGCGGGTGAGGCAAAAGTTCC 664 Query 175371 ATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAG 175430 ||| | ||||| || || | ||||| || | ||||||||| | ||||| ||| Sbjct 665 TTTCTTTAGTTGCTCAGCATCAGAATTTGTAGAATTATTTGTTGGTATAGGTGCATCAAG 724 Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 |||| ||||| || ||| ||| | ||| ||| |||||| ||||||||||||| Sbjct 725 AATTCGTGATCTTTTCAAAAGAGCCAAAGCAAAAACACCTTGTATTATCTTCATTGATGA 784 Query 175491 GATTGATGC----GGTGGGCAAGCA--ACGCAGCGCTGGTGGTATGCCAGCAAATGACGA 175544 |||||||| ||| | ||| | | | ||| ||||||| | |||||||| Sbjct 785 AATTGATGCAGTTGGTCGACAAAGAGGATCCGGCGTTGGTGGT------GGTAATGACGA 838 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG 175604 |||||||||| | || || || | || ||||||||||| ||||| | | | | || Sbjct 839 ACGAGAACAAACTTTAAACCAGCTTTTAACTGAGATGGATGGGTTTGAAACTAACAACGG 898 Query 175605 CATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCC 175664 || | || ||||| || || || || || || || | ||| ||| | | | || Sbjct 899 TGTTATCGTGATTGCAGCTACAAACCGTGTAGACATTTTAGATTCCGCTTTATTAAGACC 958 Query 175665 GGGTCGTTTTGAT 175677 ||| ||||||||| Sbjct 959 GGGCCGTTTTGAT 971 >seq13862 Length=727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTT 65085 |||||| | ||||| | |||| ||||| |||| | ||||||||| ||||| || Sbjct 470 AAGGCGCAGTGGGCCCTCCGGTGGTGTGACAGGAAGTATGCCTCCTTCGCTGAGCGGCTG 411 Query 65086 TTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGG 65145 |||| |||||| || ||||| ||||||||| || || || ||| |||||| ||| Sbjct 410 ATTGCCTTTGCGGCCGTCGAGGGGATCTTCTTCAGTGGCTCGTTTTGCTCTATTTTCTGG 351 Query 65146 TTGAAGAAGCGGGGTCTCATGCC 65168 ||||||||| |||| | ||||| Sbjct 350 TTGAAGAAGAGGGGGTTGATGCC 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596392187658080