Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq288 369 5e-97 seq620 168 8e-37 seq49 87.8 2e-12 >seq288 Length=849 Score = 369 bits (408), Expect = 5e-97 Identities = 419/557 (75%), Gaps = 4/557 (1%) Strand=Plus/Minus Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| || || || ||||||||||| || |||||||||||||| || |||||||||||||| Sbjct 848 ACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATAC 789 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 ||||||||||| || |||||||||||||||| |||||| ||||||||||| ||| || Sbjct 788 TAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTG 729 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 || | ||| || |||||||| ||||| | || |||| ||||||||| | ||||| Sbjct 728 TCCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTAC 669 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACT-CCCACTGTCTACCCATGTAAG 8548 | ||||| || | ||| ||||| ||||| | ||| | |||| | | |||||||| Sbjct 668 GAAAATCCAAGGACGCATCCCTAAACGGTA-GCTAAGTTCCCATTCACGTCCCATGTAGC 610 Query 8549 CAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAAC 8607 || | || |||||| ||||| || | || | || || ||||| ||||| || | | Sbjct 609 AAGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGC 551 Query 8608 CACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAA 8667 ||||| ||||| | ||||||||||||| || |||||||| | || |||| ||| ||| Sbjct 550 CACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAA 491 Query 8668 GATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGT 8727 |||| || ||||||| ||||||||||||||| || | | ||| || ||||| ||| Sbjct 490 CTAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGT 431 Query 8728 TCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTA 8787 ||||| |||||||||||||| || || || ||||| ||||| || | ||| ||||| | Sbjct 430 TCACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTT 371 Query 8788 GCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTG 8847 | ||| | ||| || || ||||||| ||| || |||||||||| || | | ||| Sbjct 370 GTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTT 311 Query 8848 TTTGTACTTGTAACCCA 8864 | ||| || || | ||| Sbjct 310 TCTGTGCTAGTGATCCA 294 >seq620 Length=282 Score = 168 bits (186), Expect = 8e-37 Identities = 209/282 (74%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 8029 TTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGG 8088 ||||| || |||||||| || | || ||| | || ||||||||| | || ||||||||| Sbjct 278 TTAAG-TTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACTGGC 220 Query 8089 AATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGGAAGATT 8148 | | ||| | ||||||||| | | | | |||||| || || || ||||||||| Sbjct 219 CAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAGATT 160 Query 8149 AATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAAC 8208 || | |||||||| || || ||||| || || || || || ||||||||||| || || Sbjct 159 AAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCGAAT 100 Query 8209 TTATAACCATAGTT--CTGAGACTCT-TCTTCAGTTGTCTCTCTGATTAGAGAAGATGTA 8265 || ||||| ||||| | || || | ||||||||| || | ||||| | |||||| Sbjct 99 TTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTT---TCACGGATTAAACTAGATGTT 43 Query 8266 ACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 || | ||||||||||||||||||||| | || ||||| ||| Sbjct 42 ACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAAC 1 >seq49 Length=2147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| |||| ||||||||||| || || | ||| ||||| |||||||||||||| | Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 2042 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | |||| |||| || || | || | ||||||||| ||| Sbjct 2043 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGAT 2102 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGT 8048 ||||| ||||| || || || | ||| |||||||| || Sbjct 2103 TGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615679250220520