Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq566 578 4e-160 seq288 414 1e-110 seq620 203 4e-47 seq49 134 2e-26 seq59 89.7 6e-13 >seq566 Length=2184 Score = 578 bits (640), Expect = 4e-160 Identities = 739/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 167024 TCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTT 167083 ||||||||||| | ||| | |||||||| || ||| |||| ||||| || ||| || || Sbjct 602 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTA 660 Query 167084 TTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGT 167142 ||||| || || | |||||| |||| || ||| | || || || ||||| || || | Sbjct 661 TTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 720 Query 167143 TGGTATACTCATGGACTCGCGTCCAGTTATCTTG-AGGGTGCGAACTTTCTTACTGCGGC 167201 |||||||| |||||| | || || ||| || | ||| ||| ||||| | |||| || Sbjct 721 TGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGC 779 Query 167202 AGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATC 167261 || || || ||| | |||||||||||| ||| || | ||||||| |||||| | Sbjct 780 GGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGC 839 Query 167262 TCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 167321 ||||| |||||| | ||||| ||| |||| ||| | ||||||||| | || | || Sbjct 840 ACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACA 899 Query 167322 CGGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCCTGATTG 167380 || || |||| | | ||||| ||| || || || || || || | ||||| || | | Sbjct 900 TGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAG 958 Query 167381 GTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTT 167440 |||| ||||| || || || ||||| |||||||| |||||||| || |||||| || | Sbjct 959 GTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTAT 1018 Query 167441 TCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCG 167500 || | ||||||| || || ||| || |||||||| || || || || || || | Sbjct 1019 TCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAG 1078 Query 167501 CCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTC 167560 | || ||||| ||| | | ||| | ||||| ||||| ||||||||||| || ||||| | Sbjct 1079 CTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCC 1138 Query 167561 ATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTA 167620 |||||||||| |||||||| || | ||||||||||| | |||||||| ||||| | || Sbjct 1139 ATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTA 1198 Query 167621 CAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATT 167680 | ||||| || || | | |||||||||||| |||||||| || || || Sbjct 1199 CTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACAC 1258 Query 167681 CTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCT 167740 | || || |||||| |||||||||||||| ||||| || ||||||||||||| || | Sbjct 1259 CAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTT 1318 Query 167741 TCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTA 167800 |||| | |||||| |||||||| |||||||| ||||| |||||||| ||||| || | Sbjct 1319 TCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAA 1378 Query 167801 TGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACG 167860 || | |||||| || |||| || | ||| | || | ||| | | || |||| Sbjct 1379 CAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACG 1438 Query 167861 ATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTA 167920 | ||||| |||||||| | | || || || |||||||| |||||||||||||| |||| Sbjct 1439 ACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 1498 Query 167921 AAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATG 167980 |||| ||| | | || |||||| || || ||||| | || | || ||||| |||| Sbjct 1499 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATG 1558 Query 167981 AGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 | |||||||| ||||||||||| ||| | ||||| || ||||| || ||| Sbjct 1559 AAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 414 bits (458), Expect = 1e-110 Identities = 435/572 (76%), Gaps = 0/572 (0%) Strand=Plus/Plus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 ||||| ||||||| ||| | || |||||| | |||||| | || |||||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 165879 ||| | ||||| ||||| | || |||| || | |||||||||| |||| || ||| Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 165880 GCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTAT 165939 ||||| || || || || |||||||| ||||||||||| || ||||| || || | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 165940 GGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTC 165999 || |||||||||||| ||||||||||| |||| ||| ||| | || ||| | |||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 166000 TATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAA 166059 || || | |||||||| || || | ||||| ||||| || ||||||||||||| |||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 166060 CTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTG 166119 || || || || |||||| | | || | | ||||||||| ||||| |||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 166120 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCT 166179 |||||| |||| |||||||| ||||| | || |||| |||||| ||||| ||||| Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 166180 GCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCA 166239 || |||||||||| |||| || || |||| |||||||| |||||||||| ||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 166240 CTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTC 166299 | || || || || || ||||||| |||||| || |||||||| || ||||| ||||| Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 166300 ATGCATCCCTTCCATATGCTCGGCGTTGCTGG 166331 ||||| || ||||||||| || |||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 203 bits (224), Expect = 4e-47 Identities = 217/284 (76%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 166336 TTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGA 166395 |||||||| ||| || |||||||||||||| | | || || ||| | | | | Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 166396 GAGACGACTGAA-AC--CGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 166452 || || |||| || || ||| |||||||||||||| |||||||||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 166453 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 166512 || |||||||||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 166513 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 166572 ||||||||||| || | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 166573 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGG 166616 || || || ||||| || || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 134 bits (148), Expect = 2e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 166594 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 166653 || |||||||||||| | || ||||||||||||||||| || | ||||| | || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 166654 CGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATG 166713 || ||| | ||||| ||||| || || | ||||| |||| | | ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 166714 CATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA-GTCCACTCCTGT 166772 || || |||||||| ||||||||||| || || | || | || | || | |||||| Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-TTCCTGT 1962 Query 166773 GGCACTCACCGCTCCTGC 166790 ||| | | ||||||||| Sbjct 1961 TGCATTAAACGCTCCTGC 1944 >seq59 Length=1973 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| |||||||||| ||||||| || Sbjct 587 TCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTGGTTCAAGTC 646 Query 18189 CTACCTGGGGAGTTGTT 18205 | ||||||||||| || Sbjct 647 CAGCCTGGGGAGTTTTT 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561081091860400