Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3508 154 2e-32 seq54 154 2e-32 seq13286 125 9e-24 seq22358 123 3e-23 seq5368 123 3e-23 seq2632 114 2e-20 seq2862 96.9 5e-15 >seq3508 Length=3998 Score = 154 bits (170), Expect = 2e-32 Identities = 322/477 (68%), Gaps = 2/477 (0%) Strand=Plus/Minus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || |||||||| ||||| || || || || ||||| ||||| || || || || ||| Sbjct 899 AACGACCAAGGCAACCGCACCACCCCTTCCTACGTGGCCTTCACCGAGTCCGAGCGCCTC 840 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | || ||||| || || || || || |||||| | ||| || ||||||||||| Sbjct 839 ATCGGCGATGCGGCCAAGAACCAAGTGGCCATGAACGCCTCCAACACCGTCTTTGACGCC 780 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 ||||| || || || || |||||| || || || | ||| || ||| ||||| Sbjct 779 AAGCGCCTGATCGGCCGTCGGTTTTCCGACCCCGTCGTGCAGGCCGACATGAAGCACTGG 720 Query 195554 TCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGT 195613 ||| || || | || | || ||||| | || | || ||| |||| || Sbjct 719 CCTTTCACCGTGGTCCAGGGCCCCGGTGGCAAGCCCCTCATCCAAGT-GAACTTCAAGGG 661 Query 195614 -GAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGA 195672 |||| || ||||| ||||| || ||||| || ||||||||||| |||||| || Sbjct 660 CGAGACCAAGACGTTTGCCCCCGAGGAGATTTCCTCCATGGTGTTGATCAAGATGCGCGA 601 Query 195673 GACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTA 195732 || ||| || | | | | || || ||||| | || || | || || || || || Sbjct 600 GATTGCTGAGGCCTACCTCGGCAAGGAGGTGAAGAACGCCGTCATCACCGTGCCCGCCTA 541 Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| || || || |||||||| || ||||| || | ||| || ||||| | ||| Sbjct 540 CTTCAACGACTCCCAGCGACAGGCCACCAAGGATGCCGGTGCCATCGCGGGCTTGAACGT 481 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || | || ||||| || || || || || || ||||| || || ||||||||||| Sbjct 480 CCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATTGCCTACGGCCTGGACAAGAA 424 >seq54 Length=8408 Score = 154 bits (170), Expect = 2e-32 Identities = 212/294 (72%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 195696 AAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGG 195755 |||| || | | | |||||| | || |||||||| || || | || || |||||||| | Sbjct 2001 AAACGGTAACAAAGGCAGTTATTACAGTACCTGCCTATTTTAACGACTCTCAACGACAAG 1942 Query 195756 CGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCA 195814 ||||||| ||||| | | || || ||| || | || ||| | ||||| ||||| ||| Sbjct 1941 CGACAAAAGACGCAGGTAAGATCGCCGGTTTAGAG-GTTTTACGTATTATTAATGAGCCA 1883 Query 195815 ACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG 195874 ||||| || ||| ||||||||||| | || || | | | | || ||| |||| Sbjct 1882 ACAGCAGCAGCACTTGCTTATGGTTTAGATAAAA------AAGCAAATGAAACGATATTA 1829 Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 || ||||| | ||||||||||| ||||| || ||| | | | ||| || || || Sbjct 1828 ATTTTTGACTTAGGTGGTGGTACATTTGACGTTTCAATCTTAGAAGTTGGAGACGGCGTA 1769 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 ||||||||| || ||||||||||||| |||| ||||||| || ||||| ||| Sbjct 1768 TTCGAAGTATTAGCAACTGCTGGTGATAGTCATTTAGGTGGAGATGATTTTGAT 1715 >seq13286 Length=1322 Score = 125 bits (138), Expect = 9e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || ||||| ||||| ||||| || ||| | Sbjct 891 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCCAGC 950 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || ||||| || || ||||| ||||| || ||||| ||| Sbjct 951 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1010 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || | || |||||| Sbjct 1011 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTACAAC 1070 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || |||||||| || || ||| Sbjct 1071 ATCCAGAAGGAGTCCACCCTGCAC 1094 >seq22358 Length=3586 Score = 123 bits (136), Expect = 3e-23 Identities = 156/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || ||||||||||| || ||| | Sbjct 3099 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCCAGC 3158 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||| || || ||||| ||||| || ||||| ||| Sbjct 3159 GACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 3218 Query 171982 CAACGACTTATTTTTGC-TGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 || || || || || || || || ||||| || || || || || ||| | || ||||| Sbjct 3219 CAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 3278 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | | ||||||||||| || || ||| | || || Sbjct 3279 CATCCAAAAGGAGTCCACCCTGCACTTGGTCCT 3311 >seq5368 Length=5397 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || ||||||||||| || ||| | Sbjct 2757 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGCCCAGC 2698 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||| ||||| || || ||||| ||||| || || || ||| Sbjct 2697 GACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 2638 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTC 172029 || ||||| || ||||| || || ||||| || ||||| ||||| ||| Sbjct 2637 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACGCTC 2590 >seq2632 Length=5999 Score = 114 bits (126), Expect = 2e-20 Identities = 308/462 (67%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 198486 GAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGAAGT-GGTGC 198544 ||||| |||| | || || || || || |||||||| |||||| | | || ||||| Sbjct 4838 GAGCTGACGGAGGTGGTGGACTTCCTCAAGAACCCCGAGAAGTAC-ACCAATGTCGGTGC 4780 Query 198545 CCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGC 198604 | || || || |||| | || | ||| |||| ||||| ||||| || || || || Sbjct 4779 CAAGATTCCTCGCGGTGTGATCCTGGACGGGCCCCCCGGTACCGGTAAGACGCTGCTGGC 4720 Query 198605 TCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTC--TTCAGTGCTCCGCGGCGAGTTTC 198662 || | || ||||| || |||| || |||| ||| | | | | |||||| | Sbjct 4719 CAAGGCCGTGGCAGGTGAGTCTGGTGTGCC-TTTCATTTCCGCGGCCGGGTCCGAGTT-C 4662 Query 198663 ATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGT 198722 | |||||||| || ||||| ||||| ||| || || || | || ||||| || | Sbjct 4661 GTGGAGATGTTTGTGGGTGTGGGTGCGTCGCGTGTGCGTGACATGTTCGAGCAGGC-CAA 4603 Query 198723 GAAAATCAA-CCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGG 198781 ||| | | || || ||||| ||||| |||||||| ||||| || ||| ||||||| Sbjct 4602 GAAGAACGCGCCTTGCATCATTTTCATCGATGAGATCGACGCGGTGGGTCGCCAGCGTGG 4543 Query 198782 TGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGA 198841 || | | || || || |||||||||||||| | || ||||| || || || Sbjct 4542 TGCGGGTTTCGCGGGCGGAAACGACGAGCGTGAGCAGACCTTGAATCAGCTGCTGACGGA 4483 Query 198842 GATGGATGGTTTTGACAATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGA 198901 ||||| || || || | | || ||| | || || || || || || | ||| Sbjct 4482 AATGGACGGCTTCGAGGGCAACCCCGGCATCATCGTCATCGCCGCCACCAACCGCGCTGA 4423 Query 198902 TATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGACCG 198943 |||| ||| | || || || |||||||| || ||||| || Sbjct 4422 CGTCCTGGATCAGGCCCTCCTCCGTCCCGGCCGTTTCGATCG 4381 >seq2862 Length=7126 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 195647 TCTATGGTGTTGATTAAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAA 195705 || ||||||||| |||||||||||||| ||||| | |||| |||| || | | Sbjct 4545 TCCATGGTGTTGGGGAAGATGAAGGAGACAGCGGAGAGCTTTT-TGGGGCGGCCTATTAC 4487 Query 195706 AGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGA 195765 | ||||| ||||| || ||||||||||| | ||| || || |||||||| || ||||| Sbjct 4486 CAAGGCAGTGGTGACGGTGCCTGCTTACTTTAATGACTCCCAGCGACAGGCTACGAAGGA 4427 Query 195766 CGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTG 195824 || | || ||||| | | ||| | ||||||| |||||||| || ||||||| Sbjct 4426 TGCGGGGAGGATCGCGGGGTTGGA-TGTGCAGCGAATTATTAATGAACCGACTGCGGCTG 4368 Query 195825 CAATTGCTTATGGTCTGGACA 195845 | | || ||||| |||||| Sbjct 4367 CGTTGGCGTATGGGTTGGACA 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657666759945520