Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq288 306 1e-78 seq620 170 6e-38 seq49 109 2e-19 >seq288 Length=849 Score = 306 bits (338), Expect = 1e-78 Identities = 413/573 (72%), Gaps = 2/573 (0%) Strand=Plus/Plus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||||| || || || ||| |||| || | |||||| | || | || |||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTT 41344 || || | ||||| || | | | ||||||| || || || ||||| ||| | Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 41345 GGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTAT 41404 | ||||| || ||||| ||||| || ||||| ||||| || ||||| || || || || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 41405 GGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTC 41464 || ||||||||||| | || || || |||| || ||| | ||||| | |||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 41465 TACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAA 41524 |||||| ||||||||||||| | | || || ||||| |||||||| ||||| | |||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 41525 CTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTGGGAACT 41583 || ||||| |||||| | | || || |||| ||||||||||| || |||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC-TACATGGGACGTGAATGGGAACT 634 Query 41584 TAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGC 41643 |||||| || |||||||| | || ||||| || || || | ||| ||||| || || || Sbjct 635 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 694 Query 41644 TGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCC 41703 || |||| || ||| | ||||| || | ||||| || || ||||||| |||||| Sbjct 695 AGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCC 754 Query 41704 CTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCT 41763 || || || || || || ||||||| |||| | || ||||| || || ||||| ||||| Sbjct 755 TTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 814 Query 41764 TATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 |||||| || || || ||| ||||| || || Sbjct 815 TATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 170 bits (188), Expect = 6e-38 Identities = 209/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGT 41860 ||||||||| ||| ||| ||||||||||||| || || || || | || ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 41861 GAGACGACTGAAGAGG---TTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 || || |||||| | | || ||||| |||||||| || || ||||| ||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 41918 ACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGC 41977 |||||||| || || ||||| ||||| || ||||| || | ||||||||||| || || Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 || || || || ||| | | || ||||| | ||||| ||||| ||||||||||| ||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGG 42081 || |||| ||||| || ||| ||||| |||||||| ||||| Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 109 bits (120), Expect = 2e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 42058 TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGG 42117 ||| ||||| |||||||| |||||||||||||| |||||||| | | | | | || Sbjct 2141 TACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGG 2082 Query 42118 ACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGAT 42177 | ||||||||||| |||||||||||| | |||||||| | | || | || || || Sbjct 2081 CCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 2022 Query 42178 GCATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 ||| || || ||||| ||||||||||| || || Sbjct 2021 GCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146173091781864