Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq288 304 4e-78 seq620 178 4e-40 seq49 102 2e-17 >seq288 Length=849 Score = 304 bits (336), Expect = 4e-78 Identities = 389/536 (73%), Gaps = 0/536 (0%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACC 42375 |||||| | || | || ||||| ||||| | ||||| || | | | ||||| Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 42376 ACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAA 42435 | ||| || || ||||||| || ||||| ||||| || || || || || || |||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 42436 CCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGC 42495 || || |||| || ||| | || || |||||||||||| ||||||| || | ||||| Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 42496 AGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGG 42555 |||| | || || | || || || | | |||||||| | | ||||| ||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 42556 CTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCT 42615 || ||||| || || ||||| || || || || || |||||| | | ||| | | Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 611 Query 42616 TACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTT 42675 ||| ||||||| |||||||||||| ||||| | |||||| | || ||||| || || Sbjct 612 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 671 Query 42676 GCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAA 42735 |||| ||| || || || |||||||| ||||||| ||| | || || ||| | || ||| Sbjct 672 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAA 731 Query 42736 GGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTC 42795 ||| || || ||||| |||||| | || ||||| ||||| |||||||||||||| || Sbjct 732 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 791 Query 42796 TTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 ||||| || ||||| |||||||||||||| || ||||||||| ||||||||| || Sbjct 792 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 178 bits (196), Expect = 4e-40 Identities = 212/287 (74%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 42856 TTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGT 42915 ||||||||||| || ||| |||||||| ||| |||||| || ||| | | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 42916 GAAACGACTGAAAACGAAAGCCAA------AATTATGGCTACAAGTTCGGTCAAGAGGAG 42969 ||||| |||| ||| || | || || || ||||| ||||| ||||| || Sbjct 62 GAAAC---TGAAGACG---GCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAA 115 Query 42970 GAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCG 43029 || ||||| ||||| || || || || |||||||||||||| | ||||||||||| ||| Sbjct 116 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCG 175 Query 43030 TCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATT 43089 || || || ||| |||| |||||||| | || |||||||| ||||| || || Sbjct 176 AGTTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATC 235 Query 43090 TGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGG 43136 ||||| ||| ||||||| || ||||||||||| || ||||| ||||| Sbjct 236 TGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 102 bits (112), Expect = 2e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAAT 43167 || ||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||| Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 43168 CAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAG 43227 || | || ||| ||||||||||| ||| | || ||||| | | || | || Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 43228 GTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 || |||||||| || || || || |||||||| || ||| Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143492249382468