Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq288 313 7e-81 seq620 122 3e-23 >seq288 Length=849 Score = 313 bits (346), Expect = 7e-81 Identities = 418/575 (73%), Gaps = 6/575 (1%) Strand=Plus/Minus Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 |||||||||||||||||||||||||||||||| || || || ||||||||||||||||| Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 ||||| ||||| ||||||||||| ||||| | |||||| |||||| || || |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGA-GCTGCGGATAGTGGTGCTGTATATGCAAC 26475 |||| || ||||||||||| ||||| ||| ||||| | || ||| |||| | || || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGC-AGATGCTGCAGCTACTGGAGCTGAGAAAGCTAC 669 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTC-TCCC-TGCATAT 26533 || ||||| || | ||| |||| | ||| |||||||| | | |||| || || Sbjct 668 GAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATG--TAG 611 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| |||| ||||||||| || | | ||||| || || || || ||||| ||| Sbjct 610 CAAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGC 551 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 |||||||| | | |||||||||| | ||||| || || | ||||| | |||||| Sbjct 550 CACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAA 491 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 || | ||||| || | || || ||||||||||| | | || || | |||||| Sbjct 490 CTAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGT 431 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTA 26773 ||||| || || || ||||| || || ||||| ||||| || || | || || || | Sbjct 430 TCACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTT 371 Query 26774 GTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 || |||| | ||| || ||||| | || |||||||| || | || | |||||| Sbjct 370 GTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTT 311 Query 26834 TCAGTACTTGTAACCCACTCACAAAACCTCTCCCA 26868 || || || || | ||| || || | |||||| Sbjct 310 TCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 276 >seq620 Length=282 Score = 122 bits (134), Expect = 3e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26012 CCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACC 26071 ||||||| ||| |||||||| || | | ||| | || || | ||| || || ||||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 26072 GGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAA 26131 ||||||| ||| | ||||| || | || ||| ||| || |||||||| || || || Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 26132 ATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCA 26191 ||||| | |||||||| ||||||||||| || || || || || ||||| ||||| || Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 26192 AACTTATAGCCATAATT 26208 || || || || || || Sbjct 102 AATTTGTAACCGTAGTT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147670268682720