Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq288 372 4e-98 seq620 188 8e-43 seq49 125 8e-24 >seq288 Length=849 Score = 372 bits (412), Expect = 4e-98 Identities = 407/541 (75%), Gaps = 0/541 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || ||||||||||||||||| | |||||||| | | | ||| Sbjct 309 GAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCT 368 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 | | |||||||| |||| || || ||||||||||| || || || || ||||| ||| Sbjct 369 ACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGT 428 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || ||||| || | | || || |||||||||||| ||||||| ||| | ||| Sbjct 429 GAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCT 488 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 ||||| ||| | || ||| | |||||||| || |||||||||| || || | || ||| Sbjct 489 AGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAG 548 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||| | ||||| |||||||||| |||||||||||| || |||||| | | || | | Sbjct 549 TGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT 608 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| || ||| | ||||||||| |||||| | || |||||||||||||| | Sbjct 609 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 668 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 || || | ||| || |||||| |||| || | || |||||| | ||||| || |||| Sbjct 669 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGA 728 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 |||||| |||||||||| |||||| | ||||| ||||||||||| |||| ||||| Sbjct 729 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 788 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||||||||||||||| || ||||||||||| ||||| ||| ||| || || ||| Sbjct 789 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 848 Query 155533 G 155533 | Sbjct 849 G 849 >seq620 Length=282 Score = 188 bits (208), Expect = 8e-43 Identities = 210/279 (75%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 155535 GTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCG 155594 ||| ||||| ||| | ||| ||||||||||||||| | || |||||| ||||||| Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 155595 TGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 155654 ||||||| || | ||| ||||| |||||||| |||||||||||||||||||| Sbjct 61 TGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAAC 120 Query 155655 TTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTT 155714 ||| ||||| || ||||| || || ||||| || ||| | |||||||| || || || Sbjct 121 TTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTT 180 Query 155715 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGC 155774 ||||||||| | | | ||||||||| | ||||| ||||| || || | |||||| Sbjct 181 CAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTT 240 Query 155775 AACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAA 155813 ||||||| | ||||| || ||||||||||| ||||| Sbjct 241 AACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 >seq49 Length=2147 Score = 125 bits (138), Expect = 8e-24 Identities = 121/153 (79%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGAC-GCTAGTGG 155852 || |||||||||||| | || ||||||||||||||||| || || || || || | || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAA-GG 2082 Query 155853 TAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAAT 155912 || ||| || ||||| |||||| | ||||| |||| | | |||||||||||||| Sbjct 2081 CCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 2022 Query 155913 GCACGAGCGTAACGCTCACAACTTCCCTCTTGA 155945 |||||| |||||||| |||||||||||||| || Sbjct 2021 GCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584661277321960