Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq288 398 2e-106 seq620 116 1e-21 seq49 109 2e-19 >seq288 Length=849 Score = 398 bits (440), Expect = 2e-106 Identities = 445/592 (75%), Gaps = 2/592 (0%) Strand=Plus/Minus Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || ||||| || |||||||||||||||||| ||||||||||||||||||||||| || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 41013 AACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGA 41072 |||||||||||||| || ||| || ||||||||||||||||||||||| ||| || Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 41073 CCGAATGGATAAACTAAGAATACAGCTAGA-GCTGCTGACAATGGAGCTGTGTATGCCAC 41131 |||| ||| |||||||||||||| || ||| ||||| | | |||||||| | | || || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGC-AGATGCTGCAGCTACTGGAGCTGAGAAAGCTAC 669 Query 41132 AAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGC 41191 || ||||| || | ||| |||| | ||| ||||||||| | | || ||| Sbjct 668 GAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCA 609 Query 41192 TGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCA 41251 ||||| |||| ||| ||||| || || | ||||| || || || |||||||| ||||| Sbjct 608 AGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCA 549 Query 41252 CTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 |||||| | | | |||||||| | ||||||||| || | ||||| | |||||| || Sbjct 548 CTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAACT 489 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| || || |||| || || ||||| ||||| | | || || | ||| || || Sbjct 488 AGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTTC 429 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGT 41431 ||| || || || ||||| || || ||||| |||||||| ||||| ||||| || | || Sbjct 428 ACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTGT 369 Query 41432 AGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTC 41491 ||| |||| ||||| ||| ||||||| ||||| |||||||| | ||||| ||||| || Sbjct 368 AGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTC 309 Query 41492 GGTGCTAGTGACCCAGTTACAAAACTTCTCCCAGTTGGTAGTAGTGTCTCTT 41543 |||||||||| ||| || || |||||| | ||||| | |||||| Sbjct 308 TGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCATAAGCTAGTACTTTCTCTT 257 >seq620 Length=282 Score = 116 bits (128), Expect = 1e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 40668 CCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACC 40727 ||||| | ||| || ||||||||| | ||| | | || | ||| || || | ||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 40728 GGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAAT 40787 || ||||| | | |||||||||| ||||| |||||||| || ||||| || Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 40788 ATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCA 40847 |||| | ||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 40848 AACTTATACCCGTAGTT 40864 || || || |||||||| Sbjct 102 AATTTGTAACCGTAGTT 86 >seq49 Length=2147 Score = 109 bits (120), Expect = 2e-19 Identities = 124/161 (77%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | || Sbjct 1983 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTA-AATC 2041 Query 40593 TG-TCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTG 40650 | | ||| | || ||||||||||| || || || || || || || || | Sbjct 2042 AGCACGGTTGATAATGTCAGCCCAAGTGTTGATCACGCGGCC-TTGGCTATCAACAACCG 2100 Query 40651 ACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTA 40691 | ||||| ||||| |||||||| | ||| || ||||||||| Sbjct 2101 ATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTA 2141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143661801467394