Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq288 416 3e-111 seq620 187 3e-42 seq49 114 1e-20 >seq288 Length=849 Score = 416 bits (460), Expect = 3e-111 Identities = 406/523 (78%), Gaps = 0/523 (0%) Strand=Plus/Minus Query 67780 CACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACA 67839 |||| || || ||| ||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 849 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 790 Query 67840 CGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTT 67899 | |||||| |||| ||||||||||||||||| | |||||| | |||||||| ||||| Sbjct 789 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 730 Query 67900 GACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTA 67959 | |||| || || || ||||| || || ||||||||| |||||||| ||| | |||| Sbjct 729 GTCCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 670 Query 67960 CACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATG 68019 | | |||||||||||||| || | |||||| ||||||||| | ||| || ||| Sbjct 669 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 610 Query 68020 CTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACC 68079 | | || | | |||||| || |||||||||||| |||| ||||| || || | || Sbjct 609 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 550 Query 68080 ACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAAC 68139 |||| |||| || || |||||||| | || |||||||||| |||||| | ||| |||| Sbjct 549 ACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAAC 490 Query 68140 TAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTT 68199 |||||| ||| ||||||| ||||||||||| ||||| | || || || ||||| |||| Sbjct 489 TAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTT 430 Query 68200 CTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTG 68259 | | |||||| |||||||||||||||||||| || || || || ||||||||||| ||| Sbjct 429 CACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTG 370 Query 68260 CTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 |||| | || || ||||| || |||||||||||||| Sbjct 369 TAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACC 327 >seq620 Length=282 Score = 187 bits (206), Expect = 3e-42 Identities = 210/281 (75%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 67497 CCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACA 67556 || || | ||||||||||||||| ||||| | ||||| |||||||| | || || Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 67557 GGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAG 67616 || | ||||| | ||||||||| | | | |||||||||||| || || |||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 67617 ATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCG 67676 || || || || ||||| || || ||||| || ||||||||||| ||||||||||||||| Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 67677 AACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTA 67736 || |||||||||||||| || | || |||||| | ||| | | ||| || Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACGGATTAAACTAGATGTT 43 Query 67737 ACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAA 67777 ||||||||||||||||||||||| || | || ||||| || Sbjct 42 ACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 114 bits (126), Expect = 1e-20 Identities = 120/155 (77%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || |||||||||||||| |||||||| |||||||| |||||||| || | | || | | Sbjct 1989 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 2048 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT--GC-GTCAACGACGGATTGG 67484 || | ||||| |||||||| ||||| | ||| || ||||| || |||||| Sbjct 2049 TTGATAATGTCAGCCCAAGTGTTGATCAC---GCGGCCTTGGCTATCAACAACCGATTGG 2105 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 |||||||||||||| || | ||||||||||||||| Sbjct 2106 TTGAAGTTGAAACCATTTAAGTTGAATGCCATAGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566778596989560