Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq566 551 6e-152 seq288 428 5e-115 seq620 224 1e-53 seq49 129 7e-25 seq59 93.3 5e-14 >seq566 Length=2184 Score = 551 bits (610), Expect = 6e-152 Identities = 733/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| || || ||||| || | ||| || ||||||||||||||||||||||| ||| Sbjct 1610 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAGTTTTCATGTGGT 1551 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 || || | |||| ||||| | || |||||| || |||| || || || |||||| Sbjct 1550 TGGTCTTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTGTAG 1491 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || || ||||| ||||| ||||| | | ||||| ||||| ||||| || || Sbjct 1490 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGTTCTTGAGATACGAAGTCGTATGCT 1431 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 | | || | || | ||| | |||||| | ||||||||||| | ||| | || ||| Sbjct 1430 CTTAAATTTAATGCTAAACCTACAATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 1371 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| ||||| ||||| || | ||| | || || || || | ||| || || ||| Sbjct 1370 ACAAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCTACACCGAAAATTTGA 1311 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| | || || || |||||||| ||||||||||| ||| || | || Sbjct 1310 GACCAGAATCTATTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTAAAC 1251 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| |||||||| |||||||||||| | || || || ||||| ||| | ||| Sbjct 1250 GCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTGTTTTCTACAGTAGCTCCA 1191 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||||| | ||||||||||| | || |||||||| ||||||||||| || ||| Sbjct 1190 TGAATTGCAGATAATAATGCACCACCTAAAATCCCTGCTACGCCCATCATATGGAATGGG 1131 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || | |||||||||||||| ||||||| ||| | | ||| || || || |||| ||| Sbjct 1130 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAGAAGCGGAAAATAGCTGCAACC 1071 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| ||||||||| |||||||| | ||| || ||||| ||||| | || ||| | Sbjct 1070 CCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATAGATTAAGAATACAGAA 1011 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA 67244 || || || || ||||| |||||||| ||||| || || || ||||| ||||| | ||| Sbjct 1010 ACGAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTATATGGACGAATACCTACAAGA 951 Query 67245 CGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 || || | || || || || || || ||| ||||||| | | || || || || | || Sbjct 950 CGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAAACCAAATGCACCATGTAATGC 892 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 | |||| ||| | ||| |||| ||| | ||| || |||||| || || | ||||| Sbjct 891 GATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAATCTCCTTGTGCTTCAGG 832 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| | || || | |||||||||||| | ||||| ||||| || || | || Sbjct 831 TCCCCATAATAAAATTAAGGAATGACCCATACTGTTTGCAGGTGTTGATACCGCTACAGT 772 Query 67424 GAGAAAATTAGCACCCT-CAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 | || || ||| ||| | || ||| ||| || | ||| || || ||||| ||| | Sbjct 771 TAAGAAGTT-GCATCCTTCTAGGTAAGAAGATGCTAATCCATGTGTATACCAAGATGTAA 713 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGT-GGGAAAAAGAAGT 67541 |||| || ||||| || | ||| ||||||| ||| | | | || || ||||| || || Sbjct 712 CAAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGGAATAATAAA- 654 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || || |||||||| | ||| || || ||||||||||| | ||||||||| Sbjct 653 AGGCCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATC 604 >seq288 Length=849 Score = 428 bits (474), Expect = 5e-115 Identities = 435/564 (77%), Gaps = 2/564 (0%) Strand=Plus/Minus Query 68263 CCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACC 68322 |||||||| || ||||||||| |||||||| || |||||||| ||||||||||| || Sbjct 847 CCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACT 788 Query 68323 AGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGA 68382 | |||| ||||||||||||||||||| || | |||||| | |||||||| |||||| Sbjct 787 AACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGT 728 Query 68383 CCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACA 68442 |||| || || || | ||| ||||| |||||||| || || || || ||| | || || Sbjct 727 CCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACG 668 Query 68443 CAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCA 68502 | |||||||||||||| || | ||| ||| |||||||||||||||||||||||| ||| Sbjct 667 AAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA 609 Query 68503 AAG-ATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCA 68561 | | ||| | | |||||| || | ||| |||||| |||||||||| ||||| | ||| Sbjct 608 AGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCA 549 Query 68562 CTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACT 68621 ||| || | | || |||||||||| || || ||||||| ||| || | || ||||| Sbjct 548 CTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAACT 489 Query 68622 AGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTC 68681 ||||| ||| ||||||| ||||||||||| || || | |||||| |||||||| ||||| Sbjct 488 AGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGTTC 429 Query 68682 ACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGT 68741 ||| ||||| ||||| || || || || |||||||| || |||| |||||| ||| | || Sbjct 428 ACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTTGT 369 Query 68742 TGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTC 68801 |||| | | || |||||||| | || ||||||||||| | ||| | ||||| || Sbjct 368 AGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTC 309 Query 68802 TGTGGAAGTCACCCATTCGCAGAA 68825 |||| ||| | ||| |||||| Sbjct 308 TGTGCTAGTGATCCAAGAGCAGAA 285 >seq620 Length=282 Score = 224 bits (248), Expect = 1e-53 Identities = 222/284 (78%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 67978 CCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACA 68037 ||||| | |||||||||||| || ||||||||||| ||||| ||||||||||| || || Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 68038 GGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAG 68097 ||||| ||||| | ||||||||| | | ||| ||||||||||| || || |||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 68098 ATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCG 68157 || | ||| || ||||| || |||||||| || ||||||||||| ||||||||||| ||| Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 68158 AACTTGTAACCATAGTT--CTGGGACTCAGT-TTCAGTGGTTTCACGAACCAGTGAAGAA 68214 || |||||||| ||||| | | || | || |||| |||||||| | | ||| Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTAGAT 46 Query 68215 GTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 || || || ||||| ||||| |||||||| | ||| |||||||| Sbjct 45 GTTACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908 || |||||||||||||| |||||||| || ||||| ||||||||||| ||| |||| ||| Sbjct 1989 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 2048 Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968 |||| || ||| ||||| || | || || ||||||| | || |||||| Sbjct 2049 TTGATAATGTCAGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGATTGGTTG 2108 Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACA 68007 |||||||||||||| | |||||||||||| || |||||| Sbjct 2109 AAGTTGAAACCATTTAAGTTGAATGCCATAGTACTAACA 2147 >seq59 Length=1973 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 35509 AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGC 35568 ||||||||||| ||| ||||||| |||||||||| ||||||| |||| ||||| || | Sbjct 660 AACTCCCCAGGCTGGACTTGAACCAGCGACCAATCGGTTAACAGCCGATTGCTCTACCAC 601 Query 35569 TGAGCTACTGAGGATT 35584 |||||||||||||||| Sbjct 600 TGAGCTACTGAGGATT 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571884278172120