Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq673 120 9e-22 >seq673 Length=1750 Score = 120 bits (132), Expect = 9e-22 Identities = 317/475 (67%), Gaps = 12/475 (3%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTT-AAA 288941 ||||| || || | | |||||| ||||| | || | || | | | || | || ||| Sbjct 940 TCTAAAATGTCTACACGGTTTGTAGCTGCAATCACGATAACACCGTTG-TTAGTTTCAAA 882 Query 288942 TCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCT 289001 |||||||| ||||||| || || | |||||||| | ||| ||||| ||| | Sbjct 881 CCCATCCATCTCAGTTAAAAGCTGGTTTAAAGTTTGTTCTCGTTCGTCATTACCACCACC 822 Query 289002 TGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 | | || || || ||| ||| | |||||| ||||||||||| |||||||| || | Sbjct 821 ---AACGCCGGA-TC-CTC-TTTGTCGACCAACTGCATCAATTTCATCAATGAAGATAAT 768 Query 289062 ACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACC 289121 ||| || | ||| | | || || || | || | | | ||||| || | ||| Sbjct 767 ACAAGGTGTTTTTGCTTTGGCTCTTTTGAAAAGATCACGAATTCTTGATGCACCTATACC 708 Query 289122 AACATACATTTCTACAAATTCAGAAGCGGA--TACTTGAATGAATGTTACATTTGCTTCG 289179 |||| | | |||||||||||| || || || ||| || ||| | || ||||| || Sbjct 707 AACAAATAATTCTACAAATTCTGATGCTGAGCAACT--AAAGAAAGGAACTTTTGCCTCA 650 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | ||| | || | | || |||||||| || || || || |||||| || Sbjct 649 CCCGCGATAGCCTTAGCTAATAAAGTTTTACCTGTCCCTGGAGGACCTGATAATAGGACA 590 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || ||||| | |||||| ||| || |||| ||||| ||||||| || ||| Sbjct 589 CCTTTTGGAATTTTTGCACCAACACGTGTATAACGTTCAGGTTTCTTTAAGAAAGTAACA 530 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||||| | || || | ||| | ||||| || || |||||| ||||||||| Sbjct 529 ATTTCTTGAAACTCTTCTTTAACTTCATCGATACCAGCAACATCATCAAAAGTAA 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471368957339567