Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq566 515 4e-141 seq288 437 1e-117 seq620 206 3e-48 seq49 129 6e-25 >seq566 Length=2184 Score = 515 bits (570), Expect = 4e-141 Identities = 725/1010 (72%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 152371 GATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 152430 ||||||||| | || |||| |||||||| ||| |||||||||| || ||| || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 152431 CCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTG 152489 |||| | || | |||||| |||| || ||| | || || || ||||| | || ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 152490 GTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGT 152549 |||||| || || || ||| ||| || || || || ||||| | |||| || || Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAACTTCTTAACTGTAGCGGT 782 Query 152550 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 152609 || || || ||| | |||||||||||| | | | | ||||| ||||| || || Sbjct 783 ATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCACA 842 Query 152610 AGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGG 152669 ||| |||||| | ||| |||| | || ||| | ||||||||| | || | || || Sbjct 843 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATGG 902 Query 152670 GGCTTTCGCTCTAATCGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGTCTCATCGGTA 152728 || || | | |||| || ||| || || || || || || | || ||||| | |||| Sbjct 903 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 961 Query 152729 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 152788 | ||||| || || || ||||| |||||||| ||||| || || || ||| || || Sbjct 962 TTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTCT 1021 Query 152789 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAA 152848 | ||||| ||||| || ||| | |||||||| ||||||||| ||| ||||| ||||| | Sbjct 1022 TAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 1081 Query 152849 TCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATA 152908 | ||||| ||| | | ||| | ||||| ||||| ||||||||| | || || || |||| Sbjct 1082 TTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCATA 1141 Query 152909 TGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAG 152968 ||||||| || ||||| ||||| || || || || | ||||| |||||||| | ||| | Sbjct 1142 TGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACTG 1201 Query 152969 TAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGC- 153027 |||| || || | | | |||||||||| |||||||| ||| || || ||| | Sbjct 1202 TAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTT-TACACCA 1260 Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 || ||| |||||| || ||||| ||||| || || || | |||||||| || || || Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147 || | ||||| || ||||| |||||||| ||||| ||| | ||||| || || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207 ||| | ||||| |||| |||| || | ||| | || | ||| | | || ||||| Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 || |||||||||||| | | || | |||||||| |||||||| || ||||| || || Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 153268 AATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAG 153327 |||||| | || ||||||||| || | | ||| |||| | |||||||| ||||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 153328 AACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCTGTGATA 153377 ||||| || ||||| || ||||| || ||||| || ||||| || | ||| Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 1610 >seq288 Length=849 Score = 437 bits (484), Expect = 1e-117 Identities = 423/540 (78%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||| | || |||||||||||||||| | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | ||||||||| | || || |||||||| || || || || ||||| || ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || |||||||| || || | ||||| |||||||||||| ||||||| ||| ||||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 |||||| |||||||| | |||||||| || | |||||||| || ||| | || || ||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTG--GTATCTATG 151163 || |||||||||||||||| |||||| || || || |||||| | | | ||| || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 151164 CTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCG 151223 | |||||||| ||||| |||||||| ||||| || || |||||||| ||||| | || Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 | || | ||| |||||||| ||||| || |||||| ||| | || || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTG 151343 ||||| |||||||||| ||||| | ||||||||||| || ||||||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 151344 TCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTG 151403 | ||||||||||| ||||||||||| |||||||| ||||||||| |||||| ||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 206 bits (228), Expect = 3e-48 Identities = 218/284 (77%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 151406 TTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGT 151465 || ||||| || | ||| || |||||||||||||| || || ||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 151466 GAGACCACCGAAAACGA-GTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 151522 || || ||| ||| || | | ||||| |||||||| ||||| ||||||||||| Sbjct 62 GAAACT---GAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 151523 ACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCC 151582 || ||||||||||| || ||||||||||||||||| ||| | |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 151583 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 151642 |||||||| || ||| | | ||||||||| | || || ||||| ||||| ||||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 151643 TTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGG 151686 || ||||| |||||||| || || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 129 bits (142), Expect = 6e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 151657 TGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGG 151716 ||| || || |||||||||||| | || ||||||||||||||||| || | | ||| | Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 151717 TCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGA 151776 || ||| || | ||||| ||||| ||| || | |||||||| | | | |||||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 151777 AGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 151815 ||| |||||||| ||||| || |||||||||||||| || Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549458949168520