Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq566 526 2e-144 seq288 394 1e-104 seq620 167 3e-36 seq49 89.7 6e-13 >seq566 Length=2184 Score = 526 bits (582), Expect = 2e-144 Identities = 755/1056 (71%), Gaps = 35/1056 (3%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 |||||| | |||||| | | ||||| |||||||| |||||||||||||||| || | Sbjct 581 AAAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTG 640 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||| || |||||| | || || || | || ||| | || || ||||| || Sbjct 641 GTTGGTCAGGCCTTTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAG 700 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || ||||| || || || ||||| |||||||| | ||||| || || || || ||| Sbjct 701 GTACGACTTTTGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGAT 760 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 || || ||||||| ||| ||||||||||||| | |||||||||| || | | Sbjct 761 GCAACTTCTTAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTT 820 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | | |||||||| || |||||||||||| | || ||| ||||| | |||||| ||| Sbjct 821 TATTATGGGGACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTAT 880 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTT 73711 || ||| | ||||||||||| | ||||| | || || ||| || ||| | || || Sbjct 881 GGGCTTTTATCGCATTACATGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTC 939 Query 73712 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATC 73771 ||||| || | ||||| || || ||||| || |||||| | || || || | | ||| Sbjct 940 GAGATCGCTCGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATT 999 Query 73772 GCAGTATTCACGAGCATCT---TTC-TAATATATCCTTTAGGAC-AGCATAGTTGGTTCT 73826 || |||||| | ||| ||| |||| |||||| |||||| |||| |||||||||| Sbjct 1000 GCGGTATTC----GTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCA-AGTTGGTTCT 1054 Query 73827 TCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCC 73886 |||| || || || || ||||| || || || | | |||||| |||| ||||||| Sbjct 1055 TCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCC 1114 Query 73887 ACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCAT 73946 | || || ||||| ||||| ||||||||||| |||||||| || | ||||| |||| Sbjct 1115 ATAACTGGACACTTAACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCAT 1174 Query 73947 TACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAAT 74006 || ||| ||| || ||||| || || ||| | |||||| | | |||||| Sbjct 1175 TATTATCTGCAATTCATGGAGCTACTGTAGAAAACACACTATTTGAAGA----------- 1223 Query 74007 ACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAG 74066 || | | | | ||| | || ||| | || || || ||||| ||||| Sbjct 1224 ----TG--GTGATGCTGCAAAC----ACATTCCGTGCGTTTACACCAACACAATCAGAAG 1273 Query 74067 AGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTT 74126 | |||||| ||| | || || || ||||||||||| || || || ||| |||| || | Sbjct 1274 AAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCT 1333 Query 74127 CAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACAT 74186 | |||||| | | | |||||| | ||||| || || || || | ||| | |||||| Sbjct 1334 CTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAA 1393 Query 74187 CATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAG 74246 ||| | ||||| |||||| ||||| | || | |||||||||||||| |||||||||| Sbjct 1394 GTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACTTCGTATCTCAAG 1453 Query 74247 AGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT- 74305 | | | ||||| ||||| ||||| |||||||| ||||||||||| || | |||| || Sbjct 1454 AACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATA-TCTTATTA 1512 Query 74306 AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTC 74365 || |||||||| ||| |||||||| | | || ||||| ||||| |||||||| ||| Sbjct 1513 AACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAAACTTTGTATTC 1572 Query 74366 CCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 ||||| || || || ||||| || ||||| || ||| Sbjct 1573 CCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 394 bits (436), Expect = 1e-104 Identities = 416/545 (76%), Gaps = 2/545 (0%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 ||| || || || | ||| | |||||||| ||||| |||||||||||| | |||| Sbjct 305 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAAC 364 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 ||| | || ||||| | || || |||||||| |||||||| ||||||||||| || Sbjct 365 AGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTAT 424 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | | ||||||||||| || || | ||||| || |||||||||||| ||||||| || | Sbjct 425 CCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTAT 484 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 ||| ||| ||| | || || | |||||||| || | |||||||| || || | || Sbjct 485 TCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGA 544 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 72553 ||||||| | || ||||| ||||||||||| | || | || ||||| |||||| || Sbjct 545 CGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 603 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 604 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 663 Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 | | ||||| | |||||| || ||| ||||||||| |||||||||| | || || ||| Sbjct 664 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAA 723 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 |||| || ||| ||||||||||||||||| ||||||| || ||||| |||||||||| Sbjct 724 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCA 783 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 784 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 843 Query 72794 CAGGT 72798 | ||| Sbjct 844 CTGGT 848 >seq620 Length=282 Score = 167 bits (184), Expect = 3e-36 Identities = 205/279 (73%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 72801 GTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAG 72860 ||| ||||| | | |||||||| ||||||||||| ||||| || || | ||||| | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 72861 AGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 72920 || || ||| || | |||||||| || || |||||||||||||||||||| Sbjct 61 TGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAAC 120 Query 72921 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 72980 || ||||| || ||||| || || ||||| || | ||||||||||| || || || Sbjct 121 TTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTT 180 Query 72981 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTT 73040 ||||||||||||| | |||||||||||| | |||| | || || || || | ||||| Sbjct 181 CAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTT 240 Query 73041 AACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAA 73079 ||| | | ||| | |||| ||||||||||| ||||| Sbjct 241 AACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 >seq49 Length=2147 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/203 (72%), Gaps = 12/203 (6%) Strand=Plus/Minus Query 73058 GTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAAC 73116 |||| |||||||||||| | || || ||||||||||||||||| ||||| ||| || || Sbjct 2142 GTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAA- 2084 Query 73117 GGAAAGATTGTACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 73174 | | || | ||||| |||| || || | ||| | || | | || ||||||| Sbjct 2083 -GGCCGCGTG-ATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAG 2026 Query 73175 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC---ATCTGCTGAGTCTA 73231 | ||||| ||| | || || ||||||||||| ||||| |||| |||| || ||| Sbjct 2025 TAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATG-TTCTT 1967 Query 73232 CAACAGTTGCATTAACTGCACCT 73254 | | |||||||||| || ||| Sbjct 1966 C--CTGTTGCATTAAACGCTCCT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572703234552280