Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7782 241 2e-57 seq22075 116 5e-20 seq4552 116 5e-20 seq4077 98.7 1e-14 seq18521 96.9 4e-14 >seq7782 Length=16676 Score = 241 bits (266), Expect = 2e-57 Identities = 347/488 (71%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| ||||||||||| ||||| || ||||||||||||| |||||||| Sbjct 6674 CTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGA 6615 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| | ||| | ||||| | | |||||| | ||||| || | ||| Sbjct 6614 GGTACCGTTCGAGCCGCGGATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCC 6555 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| |||||||| | ||||||||| ||||| || ||||| |||||||||||||| || Sbjct 6554 GATCCCGCCGGCGAATTTGGAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATC 6495 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||||| |||||||| | ||| ||||| || || |||||| | | ||||| Sbjct 6494 GATGGAGTCCTCCTTCATGGTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCC 6435 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || ||||| || || ||||| | || | |||||| || ||||| Sbjct 6434 GGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAAGAGCTTTTGGGACATGAGGTTATAGGT 6375 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| || ||| | || || ||| || | || ||||||||| || Sbjct 6374 CTCGATGGCG-GCGTCGACG--TCCTCCTTGTGG--------AT----GCCGATGGCCAC 6330 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 |||||||| ||||| |||||| ||||| | ||||| |||| || |||| ||||||||| Sbjct 6329 GCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTAGGA 6270 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| |||||| || | || || ||||||| | |||||| Sbjct 6269 CTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCCGGTCGTAGATGATGGC 6210 Query 1630545 GGCGTCGA 1630552 | || || Sbjct 6209 CGAGTTGA 6202 Score = 228 bits (252), Expect = 1e-53 Identities = 381/543 (70%), Gaps = 16/543 (3%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 || |||||| || ||||| ||||| ||||| ||| | |||||| || ||||||||||| Sbjct 8093 CTTGTCGACCGTGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCC 8034 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||||||| || ||| | |||| |||||| || |||| | ||||||| | Sbjct 8033 GGTCTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGG 7974 Query 1627101 GTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 || ||| || | |||||| |||||| |||| || |||| |||| |||||||| Sbjct 7973 GTTGGCCAGGTGGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGC 7914 Query 1627161 CATGTCGATGGTGACCCGGTTGGGC---ACCTCCCACACGGTCTTGAAGATGGCCTTGAG 1627217 |||||||| |||| | || || | |||||||||||||||| ||| ||||||| Sbjct 7913 CATGTCGA---TGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTTGAG 7857 Query 1627218 GTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCT 1627277 ||| | || | | | ||| | | ||||| ||||| | | | || | Sbjct 7856 CTCGCGGGGGA-----TGCTGGCC-ACGTTTTGCACGGAGCCACGGTTGCCCATGATCTG 7803 Query 1627278 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGG-CGCTTGACCAGGTGGCGGT 1627336 || ||| | |||| ||||||| || ||| | |||||| ||| ||| ||||| || Sbjct 7802 GTTGCGCACCTCGGCGTTCCACAGCCCACGCTCGATCAGGTCGC-TGAGCAGGTACTTGT 7744 Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396 |||| | ||| || || |||| ||||| || || | ||| |||||| ||| | | || Sbjct 7743 TGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCT 7684 Query 1627397 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 1627456 || | |||| ||||||| |||||||||| || | || ||||||||| |||| | | Sbjct 7683 CGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCA 7624 Query 1627457 GGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAG 1627515 |||| || ||||||| |||||||| | || || | ||||| || || |||||||||| Sbjct 7623 GGAGGGAATTGCGCACGCCGTGCTCCTGGACCTTG-GCGCGGAGGCCGGGCCAGTCCCAG 7565 Query 1627516 CGG 1627518 ||| Sbjct 7564 CGG 7562 Score = 129 bits (142), Expect = 7e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 || ||||| || |||||||| || || || || |||| |||| || | ||| |||| Sbjct 6868 GGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAACAAATCAGGCGTC 6809 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 || || || ||||| ||||| || || || | | ||| |||||||| ||||| ||| Sbjct 6808 CAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCGTGATTCTTGCGCAGG 6749 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || || | |||| |||||||||||||||||||| ||||| ||| |||| ||||||| Sbjct 6748 TCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGAGCCCTTG 6689 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||| || || || Sbjct 6688 CGCTTTCCCCCCCC 6675 Score = 89.7 bits (98), Expect = 6e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 || || ||||| || || || | ||| || || |||||||||| ||| || | |||| Sbjct 7360 TCCGCCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGCTTGGCC 7301 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || ||| |||||| |||||||||||| |||||||| ||||||| ||| |||| | Sbjct 7300 TCCTCCACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTCACCACCTTG 7241 Query 1627990 ACGATCTCGTGCAG 1628003 |||||||| ||| Sbjct 7240 GTGATCTCGTACAG 7227 >seq22075 Length=10782 Score = 116 bits (128), Expect = 5e-20 Identities = 132/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATG---CACAAGGTGGTGCCCATG 507694 ||||||||||| || |||||| | |||||| |||| ||| || | |||| Sbjct 4470 AACCGGCAGCCCTCTTTGCACAAGCTCTCCAT---CATGGCCCACCGCGTCAAGGTCATG 4414 Query 507695 CCCGGGCGCACCATGCGATTCAACCTGGCCGTCA-CGGGCACCTACAACGCCGACTTTGA 507753 ||| |||||||| | || |||||| | |||| || || |||||||||||||||| || Sbjct 4413 CCCTGGCGCACCTTCCGCTTCAACGAGTGCGTCTGCGCGC-CCTACAACGCCGACTTCGA 4355 Query 507754 CGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGG 507806 ||| |||||||||||| ||||| |||||||| | ||| ||| |||||||||| Sbjct 4354 CGGGGACGAGATGAACATGCACCTGCCCCAGACTGAGGAGGCCCGCGCCGAGG 4302 Score = 91.5 bits (100), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 509089 CGAGATGTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGAC 509148 |||| | || | |||| ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 3325 CGAGTTCTTCTTCCACACGATGGGCGGGCGAGAGGGGCTGGTCGACACGGCGGTCAAGAC 3266 Query 509149 GGCCGAGACGGGCTACAT 509166 |||||||||||||||||| Sbjct 3265 GGCCGAGACGGGCTACAT 3248 >seq4552 Length=1309 Score = 116 bits (128), Expect = 5e-20 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | |||||||||||||| ||| | ||||||||||| ||||||||||| Sbjct 244 CTGTTCGAGCTCATCCTCGCCGCCAATTACATGGACATCAAGCCCCTGCTCGATCTAACC 185 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||| | ||||||| |||||||||||||||| |||| ||||||||||| ||||| Sbjct 184 TGCGCCACGGTGGCCAGCATGATCAAGGGCAAGACGCCTGAGGAGATCCGTCGCACCTTC 125 Query 1592288 AACATCA 1592294 ||||||| Sbjct 124 AACATCA 118 >seq4077 Length=8071 Score = 98.7 bits (108), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || |||| || ||||||| | |||||||||||||||| ||||||||||| Sbjct 603 CACCTTCCGCCTCAATCTCTCCGTCACCACCCCCTACAACGCCGACTTCGACGGCGACGA 544 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 |||||||| ||| | ||||| || | || || ||||| | ||| | ||||| Sbjct 543 AATGAACCTCCACCTCCCCCAAACCCTCAACGCCCGGGCCGAAGCCGAGCAAATCATGAT 484 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGA 507882 || | | || | ||| || || || |||||| ||| |||| ||| | || || Sbjct 483 GGTTCCCCGGAATATCGTCTCCCCCCAAGCCAACTCCCCCGTCATGGGCATCGTGCAAGA 424 Query 507883 CGCCCTCGTCGGCTGCGGCTTCCTCACGACCAACGACACCTTTATGGACCGCGGCGTGCT 507942 ||| ||| |||||||| | |||||| ||||||||| | || || | |||| | Sbjct 423 CGCTCTCCTCGGCTGCTCCCGCCTCACCCGTCGCGACACCTTCGTCGAGCGAGACGTGAT 364 Query 507943 CATG 507946 ||| Sbjct 363 GATG 360 >seq18521 Length=3205 Score = 96.9 bits (106), Expect = 4e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 869713 GGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGAT 869772 ||||| |||||| ||||| || || |||||| || ||||| ||||||||| || Sbjct 74 GGCCAAGTTCTCATTGACGATCCCATCCGAGGCGGCAAAGAAAGCAAGGACGTGCGAGAC 133 Query 869773 AAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCAC 869832 ||| || ||||| | ||| |||| | |||||| ||||| | ||||||| Sbjct 134 AAAATGACGCTCTTTGTCAGAGAGCTTCTCCCAGTCCGTCTTGTCGTGGGCCAGGTCCAG 193 Query 869833 CTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCA 869880 |||||| || ||||||| ||||||||||| | |||||||| ||||| Sbjct 194 CTCCTCTGCCGTCCAGAAGGAGGCCTCGGCTTGCTTGTACATGTCCCA 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105186799126747