Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13286 136 4e-27 seq22358 118 1e-21 seq5368 98.7 9e-16 >seq13286 Length=1322 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || || ||||| || |||||||| || || ||| Sbjct 890 GATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCCAG 949 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||||||| ||||| || || || || ||||| || Sbjct 950 CGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 1009 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || ||||| ||||||||||| | | | | || || || || Sbjct 1010 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTACAA 1069 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || |||||||||||||| |||| || || Sbjct 1070 CATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGG 1117 >seq22358 Length=3586 Score = 118 bits (130), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || || || || || || ||||| || || ||| Sbjct 3098 GATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCCAG 3157 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||||||| ||||| || || || || ||||| || Sbjct 3158 CGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 3217 Query 24823 ACAACGTTTGATCTTTGCCGGG-AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 || || | ||||| || ||| || ||||||||||| | | | || || || | Sbjct 3218 GCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACA 3277 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 |||| |||||||| || || || |||||||| |||| |||| || ||||| Sbjct 3278 ACATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGGCGG 3329 >seq5368 Length=5397 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || || || || || || ||||| || || ||| Sbjct 2758 GATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGCCCAG 2699 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||||| |||||||| ||||| || || || || || || || Sbjct 2698 CGACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 2639 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | ||||||||||| || |||||||||||| Sbjct 2638 GCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGAT 2602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449763806077480