Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq21338 89.7 4e-13 seq13286 86.0 5e-12 seq5368 82.4 6e-11 >seq21338 Length=400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| | || |||||||||||||| ||| | | || ||| | Sbjct 387 ATGCAGATCTTCGTCAAAACGCTGACTGGCAAAACCATTACAGTCAATATCGATCCTTCC 328 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || || | | || ||| |||||| | ||| || ||| | || |||||| Sbjct 327 GACACCATCTGGACTTTGAAGCAGGAGATTGAAGTCAAGGAGGGCATCCCGCCCGATCAA 268 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || ||||| |||||| ||||| ||||||| | | ||| | ||||| ||||| Sbjct 267 CAGCGGCTCATTTACGCGGGTGAACAGGTGGAGGACACGCGCACAGTCGCGGACTACAAA 208 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || || || Sbjct 207 ATCCAGAAGGAGTCCAC 191 >seq13286 Length=1322 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| || | || ||||||||||| || |||| |||||| Sbjct 888 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCC 947 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || || || ||||| ||||| || ||| | || || Sbjct 948 AGCGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 1007 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||||| || ||||||||||| | | || | |||| ||| Sbjct 1008 CAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTAC 1067 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || ||||| ||||||| | ||||| || || Sbjct 1068 AACATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGG 1117 >seq5368 Length=5397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| || | || ||||| ||||| ||| |||| |||||| Sbjct 2760 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGCCC 2701 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || ||||||||||| ||||| || ||| | ||| || Sbjct 2700 AGCGACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 2641 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATG 110429 || || |||| || | ||| || || ||||||||||||| Sbjct 2640 CAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATG 2601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412721895416963