Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7782 214 3e-49 seq22402 145 1e-28 seq13862 127 3e-23 seq16840 118 2e-20 seq22075 113 7e-19 seq4077 109 9e-18 seq18521 107 3e-17 seq4552 104 4e-16 seq4695 87.8 3e-11 >seq7782 Length=16676 Score = 214 bits (236), Expect = 3e-49 Identities = 349/503 (69%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| ||||||||||| ||||| || ||||||||||| | |||||||| Sbjct 6674 CTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGA 6615 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| | ||| | ||||| | | |||||| | ||||| || | ||| Sbjct 6614 GGTACCGTTCGAGCCGCGGATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCC 6555 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| |||||||| ||||||||| ||||| | || || || ||||||||||| || Sbjct 6554 GATCCCGCCGGCGAATTTGGAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATC 6495 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||||| |||||||| | || ||||| || || |||||||| | ||||| Sbjct 6494 GATGGAGTCCTCCTTCATGGTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCC 6435 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||||| || ||||| || || |||| | || |||||||||| | ||||| Sbjct 6434 GGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAAGAGCTTTTGGGACATGAGGTTATAGGT 6375 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTG---GCCGATGGC 2073896 ||| || ||||| |||||| | | | ||| ||||||||| Sbjct 6374 CTCGATGGCG---------GCGTC---GACGTC------CTCCTTGTGGATGCCGATGGC 6333 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 |||||||||||||||| |||||| ||||| | |||| | || || |||| |||||| Sbjct 6332 CACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTA 6273 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 |||| ||||||| | ||| ||||| |||| | | ||| || |||| | ||| Sbjct 6272 GGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCCGGTCGTAGATGAT 6213 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGT 2074039 ||| | || || | |||||||| Sbjct 6212 GGCCGAGTTGATGCGCTCCTTGT 6190 Score = 201 bits (222), Expect = 2e-45 Identities = 376/543 (69%), Gaps = 22/543 (4%) Strand=Plus/Minus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 |||||| || ||||| ||||| | ||| || |||||||| || |||||||||||||| Sbjct 8090 GTCGACCGTGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCCGGT 8031 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCGGG 2069370 |||||| || ||| | |||| |||||| || |||| ||| ||| | ||| Sbjct 8030 CTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGG--GCGGGCGTGGGG 7973 Query 2069371 ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCC 2069430 ||| || || |||||| |||||| |||| || |||| |||||||||||||| Sbjct 7972 TTGGCCAGGTGGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCC 7913 Query 2069431 ATGTCGATGGTCACGCGGTTGGAC---ACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 ||||||||| |||| || | | |||||||||||||||| | || ||||||| Sbjct 7912 ATGTCGATG---ACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTTGAGC 7856 Query 2069488 T-GCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTG-CGATGAGGC 2069545 | |||| || || | | | | ||||| ||||| | | || | |||| Sbjct 7855 TCGCGGGGGATGCTGG-------CCACGTTTTGCACGGAGCCACG-GTTGCCCATGATCT 7804 Query 2069546 GGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATG-CGCTCGACCAGGTGGCGG 2069604 ||| ||| | |||| ||||||| || ||| | |||| | |||| || ||||| | Sbjct 7803 GGTTGCGCACCTCGGCGTTCCACAGCCCACGCTCGATCAGGTCGCT-GAGCAGGTACTTG 7745 Query 2069605 TTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACC 2069664 ||||| | ||| || || |||| ||||| || || | ||| |||||| || | | | Sbjct 7744 TTGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGC 7685 Query 2069665 TCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACG 2069724 ||| | |||| ||||||| |||||||||| || | || ||||||||| |||| | Sbjct 7684 TCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGC 7625 Query 2069725 AGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAG 2069784 || || || ||||||| ||||| || | ||| || || ||| || |||||||||| Sbjct 7624 AGGAGGGAATTGCGCACGCCGTGCTCCTGGACCTTGGCGCGGAGGCCGGGCCAGTCCCAG 7565 Query 2069785 CGG 2069787 ||| Sbjct 7564 CGG 7562 Score = 138 bits (152), Expect = 2e-26 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878 |||||||| || |||||||| ||| | || ||||||| |||| |||| || |||| Sbjct 6868 GGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAACAAATCAGGCGTC 6809 Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938 || ||| | ||||| || || || || || | | ||| |||||||| ||||| |||| Sbjct 6808 CAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCGTGATTCTTGCGCAGG 6749 Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 2071998 || || | |||| || |||||||||||||||||| ||||| ||| |||| ||||||| Sbjct 6748 TCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGAGCCCTTG 6689 Query 2071999 CGCTTGCCGCCGCC 2072012 ||||| || || || Sbjct 6688 CGCTTTCCCCCCCC 6675 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || || || |||||||| || || || | ||| || || |||||||||| ||| || || Sbjct 7366 AAGGCATCCGCCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGC 7307 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 |||||| ||| |||||| |||||||||||| |||||||| |||||| Sbjct 7306 TTGGCCTCCTCCACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTG 7256 >seq22402 Length=525 Score = 145 bits (160), Expect = 1e-28 Identities = 149/192 (78%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 209 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGGA 150 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT-- 1485587 | | ||||| || || |||||||||||||||| | || | | || ||| || || Sbjct 149 GGGTGAGGCGGACAGCCGTCTGGATCTCGCGGGAG--GA-CAAGGTGGACTTCTTCGTGT 93 Query 1485588 -GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| ||||| ||||||||||||| ||| |||||||| |||||| || || |||| Sbjct 92 AGCGGGCCAGCTTGCCGGCCTCGGTGGCGAGGCGGTCGAAGATGTCGCCGATGAAGGAGT 33 Query 1485647 TCATGATCGACA 1485658 ||| ||| |||| Sbjct 32 TCAGGATGGACA 21 >seq13862 Length=727 Score = 127 bits (140), Expect = 3e-23 Identities = 201/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 794383 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATG 794442 ||||| | || | |||||| | ||| || || | || || ||| ||| ||||| Sbjct 328 GGCATCAACCCCCTCTTCTTCAACCAGAAAATAGAGCAAAACGAGCCACTGAAGAAGATC 387 Query 794443 CCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGT 794500 ||||||||||| |||||| | | |||||||| || || | |||| ||| ||| Sbjct 388 CCCTCGACGGCCGCAAAGGCAATCAGCCGCTCAGCGAAGG-----AGGCATACTTCCTGT 442 Query 794501 TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGC 794560 |||| | ||||||| ||||| | || |||| ||||||||||| || Sbjct 443 CACACCACCGGAGGGCCCACTGCGCCTTGCGTCGGACACAGGGGACCGTGTCGATAGCAT 502 Query 794561 GAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGG 794620 | ||| | || |||||| | || ||||| |||||||||||||||||| |||||| Sbjct 503 TGAGGAGCTTGTGCTTCTCTTGCCCGTTCTTGATGTAGGTGTCGATGAGGAGGGAGTAGA 562 Query 794621 TCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||| ||||||||| ||||| |||||||| ||||| || |||||| Sbjct 563 CCTCGCTGTGGATGTTCTCGATAGCGATCTGAAAGCCGTAGAAGCAG 609 >seq16840 Length=1889 Score = 118 bits (130), Expect = 2e-20 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 100 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGGA 41 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | ||||||||||||| |||||||||||||||| Sbjct 40 GGGTCAGGCGCACGGCCGTCTGGATCTCGCGGG 8 >seq22075 Length=10782 Score = 113 bits (124), Expect = 7e-19 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 429620 CATGCCCGGTCGCACCTTCCGGCTCAACCTGGCCGTGA-CGGGCACCTACAACGCCGACT 429678 ||||||| | ||||||||||| ||||| | ||| || || ||||||||||||||| Sbjct 4417 CATGCCCTGGCGCACCTTCCGCTTCAACGAGTGCGTCTGCGCGC-CCTACAACGCCGACT 4359 Query 429679 TTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCG 429738 | ||||| |||||||||||| ||||| |||||||| | ||| ||| |||||||| | || Sbjct 4358 TCGACGGGGACGAGATGAACATGCACCTGCCCCAGACTGAGGAGGCCCGCGCCGAGGCCG 4299 Query 429739 CCCACACCATGGGCGT 429754 || | ||||||||| Sbjct 4298 CCACCCTCATGGGCGT 4283 Score = 91.5 bits (100), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 431075 CGAGATGTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGAC 431134 |||| | || | |||| ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 3325 CGAGTTCTTCTTCCACACGATGGGCGGGCGAGAGGGGCTGGTCGACACGGCGGTCAAGAC 3266 Query 431135 GGCCGAGACGGGCTACAT 431152 |||||||||||||||||| Sbjct 3265 GGCCGAGACGGGCTACAT 3248 >seq4077 Length=8071 Score = 109 bits (120), Expect = 9e-18 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 429627 GGTCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGC 429686 |||| ||||||||| ||||| || |||| || | |||||||||||||||| |||||| Sbjct 607 GGTC-CACCTTCCGCCTCAATCTCTCCGTCACCACCCCCTACAACGCCGACTTCGACGGC 549 Query 429687 GACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACC 429746 ||||| |||||||| ||| | ||||| | | || || ||||||| || || | | Sbjct 548 GACGAAATGAACCTCCACCTCCCCCAAACCCTCAACGCCCGGGCCGAAGCCGAGCAAATC 489 Query 429747 ATGGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTG 429806 ||| || ||| || ||| || || || |||||| ||| |||| || ||||| Sbjct 488 ATGATGGTTCCCCGGAATATCGTCTCCCCCCAAGCCAACTCCCCCGTCATGGGCATCGTG 429 Query 429807 ATGGACGCCCTCGTCGGCTGCGGCTTCCTCAC 429838 ||||| ||| |||||||| | |||||| Sbjct 428 CAAGACGCTCTCCTCGGCTGCTCCCGCCTCAC 397 >seq18521 Length=3205 Score = 107 bits (118), Expect = 3e-17 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||||| ||||||| ||||| || || |||||| || || || ||||||||| || Sbjct 74 GGCCAAGTTCTCATTGACGATCCCATCCGAGGCGGCAAAGAAAGCAAGGACGTGCGAGAC 133 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGAC 796304 ||| |||||||| | ||| |||| |||||| | ||||| | | ||||| | Sbjct 134 AAAATGACGCTCTTTGTCAGAGAGCTTCTCCCAGTCCGTCTTGTCGTGGGCCAGGTCCAG 193 Query 796305 CTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 |||||| || ||||| |||||||||||||| | |||||||| ||||| ||| Sbjct 194 CTCCTCTGCCGTCCAGAAGGAGGCCTCGGCTTGCTTGTACATGTCCCAGATC 245 >seq4552 Length=1309 Score = 104 bits (114), Expect = 4e-16 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | |||||||||||||| ||| | |||||||||||||| |||||| | Sbjct 244 CTGTTCGAGCTCATCCTCGCCGCCAATTACATGGACATCAAGCCCCTGCTCGATCTAACC 185 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| || ||||||| | | |||||||||||| |||| ||||| ||||| ||||| Sbjct 184 TGCGCCACGGTGGCCAGCATGATCAAGGGCAAGACGCCTGAGGAGATCCGTCGCACCTTC 125 Query 2035749 AACATCA 2035755 ||||||| Sbjct 124 AACATCA 118 >seq4695 Length=9752 Score = 87.8 bits (96), Expect = 3e-11 Identities = 216/319 (68%), Gaps = 14/319 (4%) Strand=Plus/Plus Query 122644 GTCCAAGCCCATCAAGGGCACGGCGCGTCGCGGGGCGACACCCAGCGAGGACGCTGCGCT 122703 ||| ||||||||||| ||||| | || || ||| |||| | || ||||||| ||| Sbjct 828 GTCTAAGCCCATCAAAGGCACTGTCCGCCGAGGGCAGACAGCAGAGGAAGACGCTGTGCT 887 Query 122704 GGCCGCCGAGTTGGCCGCGTGTCCCAAAACCTTTGCCGAGAACCTCATGATCGTCGACCT 122763 ||||||| |||| || || || | | || ||||| || ||||| |||||| | Sbjct 888 CGCCGCCGGCCTGGCAGCCTGCGAGAAGAACCGCGCAGAGAATCTGATGATTGTCGACTT 947 Query 122764 GGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCCGGCAGC-GTCGTCGTACCGCCAGGTC 122822 ||| || || ||| | || | |||||| |||| | || |||||| | Sbjct 948 GGTTCGAAATGACAT-CTCGCGAATTGCGCGTCCGGGGTCGGTGAAAGTACCG------C 1000 Query 122823 GCCTCATGGCGATCGAGACCTATGCCGCCGTGCACCAGATGGTGACCACCGTCGAC-GCC 122881 | | |||||| | ||||||||||| | ||||| ||| |||| | || || ||| | | Sbjct 1001 GTTTGATGGCGGTGGAGACCTATGCGACAGTGCATCAGCTGGTCTCGACTGT-GACGGGC 1059 Query 122882 CTGTTG--GATCGGCACAGGACGGCGCTGGACCTCGTGCGTGCGGCCTTTCCGCCGGGCT 122939 ||||| | |||| ||||| ||| | ||| ||| || ||||||| |||| Sbjct 1060 GTGTTGGCGGAGGGCA-AGGAC-GCGATCGACGCGGTGGTGGCCTCCTTTCCAGGTGGCT 1117 Query 122940 CGATGACGGGTGCGCCCAA 122958 | |||||||| |||||||| Sbjct 1118 CTATGACGGGCGCGCCCAA 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913715642819249