Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq22358 147 1e-30 seq13286 143 2e-29 seq5368 113 3e-20 >seq22358 Length=3586 Score = 147 bits (162), Expect = 1e-30 Identities = 164/216 (76%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||| | |||| |||||| || ||||| |||||||| || |||| | || Sbjct 3312 CAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTC 3253 Query 34825 GTCCAGTTGCTTTCCG-GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34883 ||||| ||||| || |||||||| || || |||||||| |||| | |||||||||| Sbjct 3252 CTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT 3193 Query 34884 CGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 | | || ||||| || || || || || | || ||| ||||||||| | ||| || Sbjct 3192 CCTGGATCTTTTGCTTCAC--ATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGAT 3135 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| |||||||| || ||||| ||||| Sbjct 3134 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 >seq13286 Length=1322 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||| ||||||||| ||||| |||||||| || ||||| | || ||| Sbjct 1099 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCCTCC 1040 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || |||||||| || || |||||||| |||| | ||||||||||| | Sbjct 1039 AGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 980 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||||| || ||| | |||| || ||| ||| || || | || ||||| || Sbjct 979 ATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTTTTG 920 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||||||| || ||||| ||||| Sbjct 919 CCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq5368 Length=5397 Score = 113 bits (124), Expect = 3e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| ||||| ||||| ||||| ||||| ||||| |||||||| | || | ||||||| Sbjct 2601 CATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCT 2660 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || ||||| ||| | || | || ||| ||| ||||| | ||| | Sbjct 2661 TGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGA 2720 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| |||||||| || ||||| ||||| Sbjct 2721 TGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325598364456629