Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq13286 109 4e-19 seq22358 102 6e-17 seq21338 89.7 4e-13 >seq13286 Length=1322 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || ||||| || | || ||||||||||| || |||| |||| | Sbjct 888 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCC 947 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || |||||||| || || || ||| | || || Sbjct 948 AGCGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 1007 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||||| || ||||||||||||| || | |||||||| Sbjct 1008 CAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTAC 1067 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| |||||||| | |||| || || Sbjct 1068 AACATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGG 1117 >seq22358 Length=3586 Score = 102 bits (112), Expect = 6e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | Sbjct 3096 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCC 3155 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || |||||||| || || || ||| | || || Sbjct 3156 AGCGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 3215 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAA-CAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||| | || || | ||||| || ||||||||||||| | || | ||||||| Sbjct 3216 CAGCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 3275 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||||||||| || ||||| |||| || | ||||||| || Sbjct 3276 CAACATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGG 3326 >seq21338 Length=400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| | || |||||||||||||| ||| | | || || | Sbjct 387 ATGCAGATCTTCGTCAAAACGCTGACTGGCAAAACCATTACAGTCAATATCGATCCTTCC 328 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || || | | || || |||||| | || || ||| | || ||||| Sbjct 327 GACACCATCTGGACTTTGAAGCAGGAGATTGAAGTCAAGGAGGGCATCCCGCCCGATCAA 268 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || ||||| |||||| ||||| |||||||| | ||| | ||||||||||| Sbjct 267 CAGCGGCTCATTTACGCGGGTGAACAGGTGGAGGACACGCGCACAGTCGCGGACTACAAA 208 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 207 ATCCAGAAGGAGTCCAC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398761144549999