Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq2514 96.9 1e-15 >seq2514 Length=426 Score = 96.9 bits (106), Expect = 1e-15 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 1075 GAGGTTGCAGAAGGTGGCCTAACTGACGGTGAGCCATTC------TGGTTCGTGTTCGGG 1128 ||||| |||||||| | ||| ||||||| || || | ||| | |||||| Sbjct 1 GAGGTGGCAGAAGGCGCCCTGACTGACGAAGACACAGTGATTATATGGATATGCTTCGGG 60 Query 1129 AACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTAAGTTCCGCCATCGCTGG 1188 |||||||| |||| ||||||| ||| | ||||||| | ||||| || ||| | ||| Sbjct 61 AACCCCACGCAGAACTCAGGTCGCTTCAGAGAGTGCTTCAGGAAGTTTCGACATAGGTGG 120 Query 1189 AAGACCAGGCAGATCGATAGTCGATCGGCCAAGATGACCAACAAAGACCTAATCAAGCAA 1248 | || ||| ||||| ||||| ||| | | ||||||||||| | || | | Sbjct 121 ATACACAAGCATATCGACAGTCGTACGGTCGAAGGCACCAACAAAGAACAGCTCGATAGA 180 Query 1249 TGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTACGTGTTCGCGGTCTGTTC 1308 || | ||||| ||||||||| ||| || |||| |||||||| ||||| | ||| Sbjct 181 ATGGTTGAAGACTATGGCGAAGACAGCGATATCGTCAAAGTACGTGTACGCGGCATATTC 240 Query 1309 CCC 1311 ||| Sbjct 241 CCC 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145597254512304