Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq566 533 2e-146 seq288 443 2e-119 seq620 188 8e-43 seq49 129 6e-25 >seq566 Length=2184 Score = 533 bits (590), Expect = 2e-146 Identities = 740/1027 (72%), Gaps = 7/1027 (1%) Strand=Plus/Plus Query 158761 CGAAGAGAGGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTG 158820 |||| ||||| | |||||| || |||| |||||| | ||||| ||||||||||| ||| Sbjct 579 CGAA-AGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTA 637 Query 158821 TTGGCTGGTCTGGACTTCTTCTTCTACCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTT 158879 |||| ||||| || ||| || || | ||| || || | |||||| |||| || ||| | Sbjct 638 TTGGTTGGTCAGGCCTT-TTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTA 696 Query 158880 ACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTG-A 158938 || || |||||||| | ||| ||||||||||||||| | || |||| || || | | Sbjct 697 ACAGGTACGACTTTTGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAA 756 Query 158939 GGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCT 158998 || ||| ||||| | || | ||| || || || || || | |||||||||||| | Sbjct 757 GGATGC-AACTTCTTAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTT 815 Query 158999 TCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGG 159058 | | | ||||| ||||| || ||||| |||||| | ||| | ||| |||| || Sbjct 816 AATTTTATTATGGGGACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGG 875 Query 159059 ACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCC 159117 | | ||| |||| | || | || ||||| |||| ||||||| ||| || || || | Sbjct 876 ATTATGGGCTTTTATCGCATTACATGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTC 934 Query 159118 AGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTC 159177 | || || | || ||||| | ||||| ||||| || || || ||||| |||||||| | Sbjct 935 AATTCGAGATCGCTCGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGAC 994 Query 159178 CTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTT 159237 ||||||| || || || || ||| | ||||| || || || || | |||||||| | Sbjct 995 CTATTGCGGTATTCGTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCT 1054 Query 159238 TCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCC 159297 ||||||| |||||||| || || || ||| | ||| || | ||| ||||||| |||| Sbjct 1055 TCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCC 1114 Query 159298 ACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCAC 159357 | || |||||||| ||||| |||||||||||||| || || || || ||||||| ||| Sbjct 1115 ATAACTGGACACTTAACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCAT 1174 Query 159358 TTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAG 159417 | ||||||| |||||||| | || || ||||| ||| ||| || ||||| || | Sbjct 1175 TATTATCTGCAATTCATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTG 1234 Query 159418 CAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTG 159477 ||||||| || |||||| |||| ||| || || |||||||| ||||| || | Sbjct 1235 CAAACACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAG 1294 Query 159478 CAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATT 159537 | || | |||||||| || || ||||| | || || |||||||| || |||||||| | Sbjct 1295 CGAATAGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACT 1354 Query 159538 TCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTC 159597 |||| ||||| ||||| || || | ||| |||||||| | |||| ||| | ||| Sbjct 1355 TCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTT 1414 Query 159598 TTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATC 159657 | || | ||| | | || ||||| ||||| |||||| | | ||||| ||||||| Sbjct 1415 TAGCATTAAATTTAAGAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATC 1474 Query 159658 CAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGT 159717 ||||||||||||| |||||||| || || || | | || ||||| | | | ||| Sbjct 1475 CAGAATTTGAAACTTTCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGA 1534 Query 159718 TGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAG 159777 |||| | || ||||| ||||||||||| | |||||||| || ||| ||||| | | Sbjct 1535 TGGCCGCACAAGACCAACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTG 1594 Query 159778 GTAACGC 159784 | ||||| Sbjct 1595 GAAACGC 1601 >seq288 Length=849 Score = 443 bits (490), Expect = 2e-119 Identities = 436/563 (77%), Gaps = 0/563 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| ||| | ||| ||| | |||||||| || | |||||||||||||| | Sbjct 285 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 344 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| |||||||| | |||| || | ||||||||| | || || | || |||||| Sbjct 345 ATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCT 404 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || ||||||||||||||||| || |||||||||||||| || || | || || |||||| Sbjct 405 CCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAAC 464 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 |||||| ||||||||||| ||||| ||| ||| | |||||| ||||||||||||| | Sbjct 465 ATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTT 524 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| || || | || ||||||||||||||||||||||||| |||||| ||||| Sbjct 525 TGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 584 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 || |||||| | | || | | ||| ||||||||||| ||||||||| |||||| Sbjct 585 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGT 644 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 ||||| ||||| || ||||| | || || | ||| || ||||| ||||| || |||| Sbjct 645 TTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCA 704 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 |||||| | || || || |||| |||||| ||||| |||| ||||||| | ||||| Sbjct 705 GTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATT 764 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| ||| | || ||||| ||||| ||||| ||||||||||| || Sbjct 765 TCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCA 824 Query 157591 TTCCACATGCTCGGCGTTGCTGG 157613 ||||| ||| || |||||||| Sbjct 825 TTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 188 bits (208), Expect = 8e-43 Identities = 216/285 (76%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 157618 TTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-G 157676 || ||||| ||||| ||| |||||||||||| ||| || || || | | || || | Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATC-TAGTTTAATCCG 60 Query 157677 TGAAACAACTGAA-ACAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGA 157733 |||||| |||| || | || | | ||||| |||||||| ||||| ||||||||||| Sbjct 61 TGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 157734 GACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 157793 || ||||||||||| ||||||||||||||||| || || | |||||||||||||| Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 157794 ATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTG 157853 ||||||||| | | | ||||||||| | || || ||||| ||||| || ||||| Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 157854 GTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGG 157898 ||| ||||| || || || || || |||||||||||| | || || Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 129 bits (142), Expect = 6e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 157870 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGT 157929 || || || |||||||||||| | || ||||||||||||||||| || | ||||| | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 157930 CAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAA 157989 || || || ||| | ||||| ||||| || | | ||||| |||| | | ||||||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 157990 GTTATGCATGAGCGTAACGCACACAACTTCCCACTGGAT 158028 || ||||| || |||||||| ||||||||||| || ||| Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545111442447280