Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq566 464 8e-126 seq288 416 3e-111 seq620 181 1e-40 seq49 107 2e-18 seq34 84.2 3e-11 >seq566 Length=2184 Score = 464 bits (514), Expect = 8e-126 Identities = 710/1004 (71%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 ||||||||| | || || ||||| || || ||| | |||||||| || || || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTA-TTATT 662 Query 179011 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTG 179069 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 179070 GTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTG 179128 ||| || ||||| | || ||| || || ||||| ||| ||||| | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | || || ||||| | |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 | || ||||| || ||| ||| |||| ||| ||||| ||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGGT 179307 |||| || | ||||||||||| || || ||||| || || | || ||||| | ||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 || ||||| || || || ||||| || |||| |||||||| ||||||||| |||||| Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427 | ||||| || || |||||| | ||||||||||| || ||| ||||| ||||| || Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487 || || | ||| || | ||||||||||||||||| ||||||||||| ||||| || || Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547 |||||||| || ||||| || | |||||||| | | ||||| |||||||||| ||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607 ||||| || ||| | | ||||||||| || ||||||||||| ||||| | Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 1260 Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || ||| || || || ||||| ||||| |||||||| | || ||||| || || ||| Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 || || | || || || |||||| | |||||||| | | | |||||||| || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| |||| |||| || | || |||| | ||| | | || || || Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || || |||||| | | ||||| |||||||| || || || || ||||| || || Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || || | | || ||||| | | | ||| |||| | || |||||||||||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| | |||||||| || || |||| |||| ||||| || Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 1604 >seq288 Length=849 Score = 416 bits (460), Expect = 3e-111 Identities = 417/538 (78%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 177645 ATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAA 177704 | |||||||||| |||| || ||||||| || || || || |||||||| ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 177705 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 177764 || || ||||| ||||| | || || |||||||||||| ||||||||||| | || | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 177765 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 177824 || ||| | || ||| |||||||||| || | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 177825 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTC--CTTATCGGCATCTATG 177882 || || ||||||||||||| |||||| ||||| || |||||| ||| | | || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 177883 CATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTG 177942 | || ||||||||||| ||||||||| |||||| |||| ||||| || ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 177943 TTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTC 178002 | || | ||| || || || || |||||||| ||||| || |||| || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGG 178120 ||||||||||||||||||| || ||||||||||| ||||| ||| ||||||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 181 bits (200), Expect = 1e-40 Identities = 211/283 (75%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 178125 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGT 178184 || ||||| ||| | ||| ||||||||| || ||| || || ||| | ||||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 178185 GAGACGACAGAAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 || || ||| | | || | | ||||| |||||||| ||||||||||||||||||| Sbjct 62 GAAACTGAAGA--CGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAA 119 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | || |||||||| || || || |||||||| || ||||| ||||||||||| || | Sbjct 120 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTT 179 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGT 178362 |||||||||| ||| | | ||||||||| | || || ||||| || || || ||||||| Sbjct 180 TCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGT 239 Query 178363 TCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGG 178405 | || || |||||||| || |||||||| ||| | ||||| Sbjct 240 TAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 107 bits (118), Expect = 2e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 178383 ACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGA 178442 || |||||||| ||| | ||||| |||||||||||||| || | | || | ||||| Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 178443 CGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATG 178502 || || ||||||| ||||| ||| | |||||||||| | | | || |||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 178503 CACGAAAGAAATAGCACATAACTTCCCGCTTGAT 178536 |||||| | || || || |||||||| || ||| Sbjct 2020 CACGAACGTAA-CGCGCACAACTTCCCTCTAGAT 1988 >seq34 Length=2481 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 138640 GATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACT 138699 ||||| ||||| || |||||| | || ||||| ||| |||||| |||||| | | ||| Sbjct 4 GATCAATCTGAGCAATCTTTCTTAGAAGATGATCAAGTTGCAGAAGGATTCGTATTAACT 63 Query 138700 TGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATA 138758 ||||||||||| || |||| ||||| |||| ||| | |||| |||||||| || Sbjct 64 TGCGTAGCATATCCTGCATCTGATTGCCAAATTTTAACAAATCAAGAAGACGAACTTTA 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605487082145560