Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq54 141 7e-28 >seq54 Length=8408 Score = 141 bits (156), Expect = 7e-28 Identities = 205/288 (71%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||||||||| || || || || | | ||| || | || ||| ||||| ||| | || Sbjct 1715 ATCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCGAATACGCC 1774 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| ||| || | | ||| ||| || |||||||| | |||||||| | || Sbjct 1775 GTCTCCAACTTCTAAGATTGAAACGTCAAATGTACCACCACCTAAGTCAAAAATTAATA- 1833 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 || |||| || ||| ||||||| | |||||| |||| || || || ||||| || Sbjct 1834 --TCGTTTCATTTGCTT---TTTTATCTAAACCATAAGCAAGTGCTGCTGCTGTTGGCTC 1888 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||||||||| | ||||| | | ||| || || | ||||| ||||| || ||||||| Sbjct 1889 ATTAATAATACGTAAAACCTCTAAACCGGCGATCTTACCTGCGTCTTTTGTCGCTTGTCG 1948 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||| || ||||||||||| ||||| || |||||||| || | |||||| Sbjct 1949 TTGAGAGTCGTTAAAATAGGCAGGTACTGTAATAACTGCCTTTGTTAC 1996 Score = 105 bits (116), Expect = 5e-17 Identities = 292/444 (66%), Gaps = 19/444 (4%) Strand=Plus/Plus Query 281459 TCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATT- 281517 |||||||| ||||||||||| || || ||||| | || | | || |||||| || Sbjct 972 TCAAATGTTACTTCAATTTGTGGTACACCTCTAGGTGCCGCCGAAATAT-TTCCAAGTTC 1030 Query 281518 -AAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGA 281576 ||||| || | | | ||||| ||| | | | |||||||| | | | |||| Sbjct 1031 GAAATGA-CCTAAACTTTTATTGTCTGAGGCAAGTAAACGTTCACCTTGTAGTACATGGA 1089 Query 281577 TAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAA 281636 || ||| | |||| ||||| | ||||| ||| | | |||| || |||| Sbjct 1090 TATCTACTTTTGGTTGACTATCTTCAGCAGTTGAGAATGTTTCTGTTTTTGTAGCCGGAA 1149 Query 281637 TTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAG 281696 | ||||||||||| ||||| || | ||||| | ||| || |||||| | || | || Sbjct 1150 TCGTTGTGTTTCTTTCAATCATTCTAGTCATTAGACCTCCGATTGTTTCAACTCCTAAAG 1209 Query 281697 AAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAA 281756 | | || || ||||| | || | || || || || | | |||| | | Sbjct 1210 ATAACGGTGTTACATCTAACAGTAAAACATCTTTAA------------TCTCACCAGCTA 1257 Query 281757 GAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCAT 281816 ||| || | | ||||||||| ||| ||||||| |||||||||||||||| ||| || Sbjct 1258 GAACTGCGCCATTAATAGCAGCTCCAACTGCAACAACTTCATCAGGATTAACTGTTAAAT 1317 Query 281817 TTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATG 281876 | |||||||| | || || |||| || |||| | | |||||||| || | Sbjct 1318 TAGGTTTTTTA--AATGTTAACTTTTG-AACTAGTTCTTGGATAGCGGGAATACGTGAAG 1374 Query 281877 ATCCTCCAACTAATACAATTTCAT 281900 | ||||||||||| | | ||||| Sbjct 1375 AACCTCCAACTAAAATCACTTCAT 1398 Score = 105 bits (116), Expect = 5e-17 Identities = 221/329 (67%), Gaps = 18/329 (5%) Strand=Plus/Plus Query 85927 AAATCAATTAGAATATGGTTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTA 85986 |||||| ||||| | ||||| || | |||||||| ||||| || ||||| || Sbjct 1683 AAATCAGCCAGAATGTATTTCATAATTGCGGAATCAAAATCATCTCCACCTAAATGACTA 1742 Query 85987 TTACCACCTACTGCCAATGTTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCT 86046 | |||| | ||| ||| | ||||| || | | | | | | ||||| || Sbjct 1743 TCACCAGCAGTTGCTAATACTTCGAATACGCCGTCTCCAACTTCTAAGATTGAAACGTCA 1802 Query 86047 AATGTCCCAGCTCCTAAGTCATAAACAATTA-CGTTACCACCAGtttttttATTCCATTT 86105 ||||| ||| | ||||||||| ||| | || |||| | | | |||||||| Sbjct 1803 AATGTACCACCACCTAAGTCAAAAATTAATATCGTTTC-ATTTGCTTTTTTAT------- 1854 Query 86106 TTCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAAC 86165 ||||||| || ||||| |||||||| ||||| |||||||| || | ||| Sbjct 1855 --------CTAAACCATAAGCAAGTGCTGCTGCTGTTGGCTCATTAATAATACGTAAAAC 1906 Query 86166 ATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATA 86225 |||||||| || || ||| | | || || ||||||| || | ||| |||||||| Sbjct 1907 CTCTAAACCGGCGATCTTACCTGCGTCTTTTGTCGCTTGTCGTTGAGAGTCGTTAAAATA 1966 Query 86226 TGCTGGTACAGTAATAACTG-CTTTATTA 86253 || ||||| |||||||||| |||| ||| Sbjct 1967 GGCAGGTACTGTAATAACTGCCTTTGTTA 1995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739462362440766