Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq21338 82.4 5e-11 >seq21338 Length=400 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || || ||||| || | || |||||| ||| |||| ||| Sbjct 185 TGGAGAGTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCCACCTGT 244 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 | || || |||| | ||||| ||||| |||| | || || ||| | |||| | | Sbjct 245 TCACCCGCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCAATCTCC 304 Query 33667 TGTTTCAACATAGTC---ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCT 33723 || ||||| |||| | ||||||| | || | | || || || ||||| || Sbjct 305 TGCTTCAA---AGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTTTGCCA 361 Query 33724 GTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || | |||||| || |||||||||||||| || Sbjct 362 GTCAGCGTTTTGACGAAGATCTGCATAGTCGG 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328608691350720