Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq288 338 2e-88 seq620 194 5e-45 seq49 96.9 1e-15 >seq288 Length=849 Score = 338 bits (374), Expect = 2e-88 Identities = 370/488 (76%), Gaps = 4/488 (1%) Strand=Plus/Plus Query 19584 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 |||| || | ||||||||| || || || || || || || |||||||| || || || | Sbjct 364 CAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTA 423 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 |||| ||||| || | || ||| | || |||||||||||||| | || || || Sbjct 424 TCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTA 483 Query 19704 TTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTG 19763 |||| || || | ||||| | |||||||||||| ||||||||||| || | | Sbjct 484 TTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAG 543 Query 19764 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCA 19823 | || ||||| |||||||| || || | ||||||||| || || |||||| | | || Sbjct 544 ACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 603 Query 19824 T--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTG 19881 | || |||| |||||||||| || |||||||||||||| || |||| ||| | ||||| Sbjct 604 TAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 661 Query 19882 GATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCC 19941 ||||| || || | ||| ||||| || || || || ||||| || || | || ||||| Sbjct 662 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCC 721 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 | || || ||||||||||| |||| ||||||||| ||||| || ||||| ||||||| Sbjct 722 AATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTT 781 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 |||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||| |||||| Sbjct 782 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 841 Query 20062 GGCTGGTG 20069 ||||||| Sbjct 842 TGCTGGTG 849 >seq620 Length=282 Score = 194 bits (214), Expect = 5e-45 Identities = 212/276 (77%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 20072 TTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCG 20130 || |||||||| |||||||||| ||||||||||| ||||| || || | | || | || Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATC-TAGTTTAATCCG 60 Query 20131 TGAGACTACTGAACA-GGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGA 20187 ||| ||| ||| | || || | ||||| |||||||| || || ||||||||||| Sbjct 61 TGAAACT---GAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 20188 GACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTC 20247 || || ||||||||||| || || ||||||||||||||||| |||||||||||||| Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 ||||||||| ||| || ||||||||||| | ||||| ||||| || ||||| || || Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 ||| |||| | || ||| ||| ||||| || || Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAA 273 >seq49 Length=2147 Score = 96.9 bits (106), Expect = 1e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 20329 TACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGG 20388 ||| ||||| || || | || ||||||||||| ||||| || || | || | | | || Sbjct 2141 TACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGG 2082 Query 20389 TCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGAT 20448 || || || | ||||||||||||||| |||| |||||| || | || | || || || Sbjct 2081 CCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 2022 Query 20449 GCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 ||| ||||| || || || |||||||| || || Sbjct 2021 GCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148786753166478