Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq288 325 1e-84 seq620 201 3e-47 seq49 93.3 1e-14 >seq288 Length=849 Score = 325 bits (360), Expect = 1e-84 Identities = 366/486 (75%), Gaps = 4/486 (1%) Strand=Plus/Plus Query 28712 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 |||| || | ||||||||| || || || || || ||||| |||||||| || || || | Sbjct 364 CAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTA 423 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 |||| ||||| || |||||| ||| | || |||||||||||||| | || || || Sbjct 424 TCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTA 483 Query 28832 TACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTG 28891 | || || || | ||||| | |||||||||||| ||||||||||| || | | Sbjct 484 TTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAG 543 Query 28892 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 28951 | || ||||| |||||||| || || | ||||||||| || || |||||| | | || | Sbjct 544 ACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 603 Query 28952 T--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTG 29009 | || ||| ||||||||||| || |||||||||||||| || |||| ||| | || || Sbjct 604 TAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 661 Query 29010 GATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCC 29069 ||||| || || | ||||||||| || || || |||||||| || ||| | || ||||| Sbjct 662 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCC 721 Query 29070 ATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTA 29129 | |||| |||||| || || | |||||||| |||||||| || || ||||||| Sbjct 722 AATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTT 781 Query 29130 CATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGT 29189 |||| | || |||||||| ||||| |||||||| |||||||| ||||| ||| || || Sbjct 782 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 841 Query 29190 TGCTGG 29195 |||||| Sbjct 842 TGCTGG 847 >seq620 Length=282 Score = 201 bits (222), Expect = 3e-47 Identities = 213/277 (77%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGC 29257 ||| ||||| || |||| ||||| ||||||||||| ||||| || || | | || | | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATC-TAGTTTAATCC 59 Query 29258 GTGAGACGACTGAAGACATC---TCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG 29314 |||| || ||||||| | ||| ||||| |||||||| || ||||||||||||| Sbjct 60 GTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 116 Query 29315 AGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTT 29374 | ||||| ||||||||||| || |||||||||||||||||||| ||||||||||| || Sbjct 117 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 176 Query 29375 CTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 29434 |||||| || ||| || ||||||||||| | ||||| ||||| || ||||| || | Sbjct 177 GTTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 236 Query 29435 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 29471 |||| |||| | || ||| ||| ||||| || || Sbjct 237 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAA 273 >seq49 Length=2147 Score = 93.3 bits (102), Expect = 1e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 29457 TACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGG 29516 ||| ||||| || || | || ||||| ||||| ||||| ||| || | || | | | || Sbjct 2141 TACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGG 2082 Query 29517 TCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAAT 29576 || || || || ||||||||||| || |||| || ||| | | || | |||||||| Sbjct 2081 CCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 2022 Query 29577 GCATGAGCGTAATGCTCATAACTTCCCACTTGAT 29610 ||| || ||||| || || |||||||| || ||| Sbjct 2021 GCACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146624164309686