Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq288 338 2e-88 seq620 188 2e-43 seq49 129 2e-25 >seq288 Length=849 Score = 338 bits (374), Expect = 2e-88 Identities = 412/558 (74%), Gaps = 4/558 (1%) Strand=Plus/Plus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || || ||||| |||||| | || ||||| ||||| || | ||||| || Sbjct 294 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 353 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | ||||||| | || ||||| || || || || ||||||||||| || || Sbjct 354 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGAT 413 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCG 18912 || || || ||||| || || ||||| || ||| | || |||||||||||||| | Sbjct 414 ATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACT 473 Query 18913 GGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || || || |||| || || | ||||| | |||||||||||| ||||||||||| Sbjct 474 GGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCT 533 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 || | || || ||||| |||||||| || || | ||||||||| || || |||||| Sbjct 534 GCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 593 Query 19033 CTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 | | || || || ||| ||||||||||| || |||||||||||||| || |||||| Sbjct 594 TTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGA 651 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| |||||||||| || || | ||||||||| || || ||||| ||||| || ||| Sbjct 652 TGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCT 711 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | || || ||| | || |||||| ||| || | ||||||||| |||||| ||||| Sbjct 712 TAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTA 771 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 | ||||||| |||| | |||||||| || ||||| ||||| || |||||||| ||||| | Sbjct 772 CTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATA 831 Query 19271 TGCTCGGTGTCGCTGGTG 19288 || ||||| ||||||| Sbjct 832 TGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 188 bits (208), Expect = 2e-43 Identities = 213/283 (75%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 19290 GTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT-GTGC 19348 ||| || ||||| |||| ||||| ||||||||||| ||||| || | || | || | | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACAT-CTAGTTTAATCC 59 Query 19349 GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGA 19408 |||||||| || | |||||| ||||| || ||||| || || ||||||||||| | Sbjct 60 GTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAA 119 Query 19409 CTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCT 19468 |||| ||||| || ||||| || || || ||||| || | || ||||| ||||| | Sbjct 120 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTT 179 Query 19469 TCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGT 19528 ||||||| ||| || |||| ||||| || ||||||||||| || || || || |||| Sbjct 180 TCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGT 239 Query 19529 TTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGG 19571 | | || ||||| || || || |||||||||||||| ||||| Sbjct 240 TAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 129 bits (142), Expect = 2e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 19543 GTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAAC 19602 || || || |||||||||||||| ||||| || ||||| ||||| || || |||| | | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 19603 AATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAG 19662 | || || || || | ||||||||||||||| |||| |||||| | | || | || Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 19663 GTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 ||||||||||||||||| || || |||||||| || ||||| || Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141108922905678