Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7782 183 3e-41 seq13286 95.1 1e-14 >seq7782 Length=16676 Score = 183 bits (202), Expect = 3e-41 Identities = 632/964 (66%), Gaps = 39/964 (4%) Strand=Plus/Minus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || || || |||||||||||| ||| |||| | || |||||| | ||| || | ||| Sbjct 7153 GAGGCAAGGTTGCAGACGGCCACCTCGTCGGGGGCGGTGTACTCGATGATCTCCGTGCAA 7094 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 |||||| | | || || || |||| ||| ||||| || || | ||||| ||||| Sbjct 7093 AGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGGTTCGACTTGAGGTTGCAAGCGTCC 7034 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA---CGATAAACCTATGC 147642 || || |||||||| || ||| ||||| || || | || | || |||| | Sbjct 7033 TTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGGGAGTCCAACACGGCGAACCA---C 6977 Query 147643 AGGTCCTGCGC-TCG--CACCC-GC-TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697 || | || || | | |||| || |||| | || ||| || |||||| ||||| Sbjct 6976 AGCTGTTGGGCCTTGATCACCTTGCGTGCCT-TCCCG---CTC-TTCTCGTACGACTCGT 6922 Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757 | | | ||| ||||| || ||| | || || | |||||| |||| || || || | Sbjct 6921 AGAGCTGCTTGAACTCCTCCCCGCACACGTCCGCCAAGCCGGGGCACTCATTGGGGCAAA 6862 Query 147758 TCAGCGACCACATGTCGTCCGCGTTA---ACGCGTCGCATAAACAGATCCGGCACCCACA 147814 ||| ||||| ||| | |||| ||||| |||| |||| ||| ||| ||| | Sbjct 6861 ACAGGGACCA---GTCACCGTCGTTCTCCACGCGCTGCATGAACAAATCAGGCGTCCAGA 6805 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 | || || | || || || ||| | || || | | || | ||||| || | Sbjct 6804 GGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCGTGATTCTTGCG---CAGGT 6748 Query 147872 TAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 ||| | | | | |||||||||||||||| || || | ||| | ||| | | || || Sbjct 6747 CAAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGAGCCCTTG 6689 Query 147931 CGCTTTCCGCCC---TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 |||||||| ||| ||||| || | ||| || ||| ||| || || |||| |||||| Sbjct 6688 CGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGC 6629 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | | ||| | | || ||||| | | ||| | | | | ||||| || | | | Sbjct 6628 ACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTCACGGGCGCGGATGTTG 6569 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 || | | ||||| || |||||| || | || || ||||| ||||| | || | | Sbjct 6568 TGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGCGCATT-GCTTGAGGGT 6510 Query 148108 GT-GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTG 148166 || ||||||||| |||||| ||| | || | | || | || || || | | || Sbjct 6509 GTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAAGCAGGAGGATAGCTG 6450 Query 148167 CGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACT 148226 ||| | || || || ||||||||||||| | || ||||| || | ||||| Sbjct 6449 CGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAAGAGCTTTTGGGA 6390 Query 148227 CATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGAC 148286 ||| | | ||| ||||| || ||| | |||| ||| || ||| ||||| | || || Sbjct 6389 CATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTGGATGCCGATGGCCAC 6330 Query 148287 GCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGAT--TGTTGATCTTGAGAAGATAT 148344 |||||||| ||||||||| || || || || ||| || |||||||| || || Sbjct 6329 GCGCATGATCATGTGCTGGGGGCGCTC--CATGACGATGCCGTCCATCTTGAGCAGGTAG 6272 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATG 148404 || || ||||| ||| | || ||||| | ||| || || || | ||||| |||| Sbjct 6271 GACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCCGGTCGTAGATGATG 6212 Query 148405 GCCG 148408 |||| Sbjct 6211 GCCG 6208 >seq13286 Length=1322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | | ||||| || || ||||||||||| | || Sbjct 1112 ACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT 1053 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || || | |||| || ||||| || || || || ||||| Sbjct 1052 GCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 993 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||||| |||| | || | || ||| | |||||||| |||| Sbjct 992 CTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAG 933 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||||| || ||||| || || | ||| || ||||| Sbjct 932 CGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476469461786760