Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7782 215 7e-50 seq22402 114 2e-19 seq13862 109 8e-18 seq17508 107 3e-17 seq18521 96.9 5e-14 seq22075 95.1 2e-13 seq16840 91.5 2e-12 >seq7782 Length=16676 Score = 215 bits (238), Expect = 7e-50 Identities = 378/540 (70%), Gaps = 18/540 (3%) Strand=Plus/Plus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTT 262934 ||||||||||||| || || || || ||| | |||| ||| ||||||| || | Sbjct 7562 CCGCTGGGACTGGCCCGGCCTCCGCGCCAAGGTCCAGGAGCACGGCGTGCGCAATTCCCT 7621 Query 262935 GCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTT 262994 || | |||| ||||||||| || | || |||||||||| ||||||| |||| | | Sbjct 7622 CCTGCTCGCGCCCATGCCCACCGCTTCCACCGCGCAGATCCTAGGCAACAACGAGTCAGT 7681 Query 262995 CGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGT 263054 |||| | | || |||||| ||| | || || ||||| |||| || || ||| | || Sbjct 7682 CGAGCCCTTTACCTCCAACATGTACTCCCGACGTGTGCTAGCGGGTGAGTTCACCATCGT 7741 Query 263055 CAACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCG 263113 |||| ||||| ||| ||| | || | | ||| || ||||||| |||| | ||| Sbjct 7742 CAACAAGTACCTGCTCA-GCGACCTGATCGAGCGTGGGCTGTGGAACGCCGAGGTGCGCA 7800 Query 263114 ACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCC 263172 ||| | |||| | | || | ||||| ||||| | | | | || | | || | | Sbjct 7801 ACCAGATCATGG-GCAACCGTGGCTCCGTGCAAAACGTGGCC----AGCA--TCCCCCGC 7853 Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT---GCCCAACCGGGTGACCATTGAT 263229 || ||||||| |||| |||||||||||||||| | || || | || ||| || Sbjct 7854 GAGCTCAAGGAGCTCTACAAGACCGTGTGGGAGATCCGGCAGAAGTGCGT---CATCGAC 7910 Query 263230 ATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCC 263289 |||||||||||||||| |||| || |||| |||||| |||||| | |||| ||| Sbjct 7911 ATGGCGGCCGACCGCGGCGCCTACATCTGCCAGTCCCAGTCCCTCAACATCCACCTGGCC 7970 Query 263290 GACCCGACGGCCG-AGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 |||| ||| ||| ||| |||| || |||||| ||| | ||| || ||||| Sbjct 7971 AACCCCACGCCCGCCCAGC-TCACCTCCATGCACTTCTACTCCTGGAAGAAGGGGCTCAA 8029 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| || |||||||| ||| ||| | |||||||| ||||| ||||| Sbjct 8030 GACCGGCATGTACTACCTTCGCACCCGCCCCAAGGCCGATGCCATTCAGTTCACGGTCGA 8089 Score = 183 bits (202), Expect = 4e-40 Identities = 341/503 (68%), Gaps = 21/503 (4%) Strand=Plus/Plus Query 259683 ACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTTG 259742 |||||||| | || || | |||||| | ||| ||| ||||| | |||| ||||| | Sbjct 6190 ACAAGGAGCGCATCAACTCGGCCATCATCTACGACCGGGACTTCGACTACGACTACTTCG 6249 Query 259743 GTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGGC 259802 | | |||| || |||||||||| ||| || || || ||| | ||||| | Sbjct 6250 GCTTCAAGACCCTGGAGAAGTCCTACCTGCTCAAGATGGACGGCATCGTCATGGAGCGCC 6309 Query 259803 CCCAGTATATGCTCATGCGTGTCGCCCTTGGC---CATTATGGGTTTGCCGACGTCGACA 259859 ||||| | ||| ||||||| || ||| | ||| || | | | ||||||||| Sbjct 6310 CCCAGCACATGATCATGCGCGTGGCCATCGGCATCCACAAGGAG------GACGTCGACG 6363 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAG 259919 || | ||| ||||| | |||||| || || | ||||| | Sbjct 6364 CCGCCATCGAG------------ACCTATAACCTCATGTCCCAAAAGCTCTTCACGCATG 6411 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | || ||||| || || || |||||||| || ||||||||| || || ||||| || Sbjct 6412 CCACTCCCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCCTGCTTCCTCC 6471 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||| || || ||||| |||||||| ||||| |||||||| ||||| || Sbjct 6472 TCACCATGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAATGCGCCGCCA 6531 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 ||||||| |||||||| ||||| | || ||||| | |||||| | | ||| Sbjct 6532 TCTCCAAATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCCCGTGACTCCT 6591 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | ||| | ||||| |||||||| | ||||||||||| || || || |||| Sbjct 6592 ACATCCGCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTTCAACG 6651 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 ||||||| |||||||| |||||| Sbjct 6652 ACACGGCCCGCTACGTGGACCAG 6674 Score = 105 bits (116), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || || || |||||||||||| |||| ||| ||||| || ||||||||||||||| || Sbjct 6675 GGGGGGGGAAAGCGCAAGGGCTCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATC 6734 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || ||||| ||||| |||||||| ||| ||| | | || || Sbjct 6735 TTCGAGTTCCTTGACCTGCGCAAGAATCACGGCAA-CGAGCTGGA-----GCGAGCCCGT 6788 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || || ||||| | ||| |||||| || |||| |||| ||| ||| || || | | Sbjct 6789 GACCTGTTTTATGCCCTCTGGACGCCTGATTTGTTCATGCAGCGCGTGGAGAACGACGGT 6848 Query 261968 GACTGGTCGCTCTTTTGCCC 261987 |||||||| || |||||||| Sbjct 6849 GACTGGTCCCTGTTTTGCCC 6868 >seq22402 Length=525 Score = 114 bits (126), Expect = 2e-19 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 |||| ||| ||||||| || || |||||| |||||||| ||| |||||||||||| Sbjct 21 TGTCCATCCTGAACTCCTTCATCGGCGACATCTTCGACCGCCTCGCCACCGAGGCCGGCA 80 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||| |||| || ||| ||| | | | |||||||||||||| || || | Sbjct 81 AGCTGGCCCGCTACACGAAGAAGTCCACCTTGTCCTCCCGCGAGATCCAGACGGCTGTCC 140 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | | | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 141 GCCTCACCCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 191 >seq13862 Length=727 Score = 109 bits (120), Expect = 8e-18 Identities = 202/294 (69%), Gaps = 7/294 (2%) Strand=Plus/Minus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||| || | || ||||| || |||||||| ||||| ||||||||| || |||| Sbjct 617 GAGGCCCGCTGCTTCTACGGCTTTCAGATCGCTATCGAGAACATCCACAGCGAGGTCTAC 558 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098 || ||||| |||||||||||| ||||| || | |||||| || | ||| | || Sbjct 557 TCCCTCCTCATCGACACCTACATCAAGAACGGGCAAGAGAAGCACAAGCTCCTCAATGCT 498 Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158 ||||||||||| || | || | ||||| | ||||| | |||| ||| | Sbjct 497 ATCGACACGGTCCCCTGTGTCCGACGCAAGGCGCAGTGGGCCCTCCGGTGGTGTGACAGG 438 Query 1456159 GAG--GGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTT 1456215 || ||||| ||| || |||||||| | | |||||| | ||||||||| ||||| Sbjct 437 AAGTATGCCTC----CTTCGCTGAGCGGCTGATTGCCTTTGCGGCCGTCGAGGGGATCTT 382 Query 1456216 TTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 ||| ||| || ||| | || || ||| | |||||| | || | ||||| Sbjct 381 CTTCAGTGGCTCGTTTTGCTCTATTTTCTGGTTGAAGAAGAGGGGGTTGATGCC 328 >seq17508 Length=3941 Score = 107 bits (118), Expect = 3e-17 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 ||| |||| || | || ||||||| |||| ||| |||| || ||||| |||||| Sbjct 2225 GCGTCGCCTACCTTGTTCCATGCCGGGACGCGTTTCCCCCAGATGTCTTCGTGTTTTCTG 2284 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 ||| ||| || | |||||||| | ||| || ||||| ||| | |||||||||||| | Sbjct 2285 TTGACGATGCAGTCGGATTCGATTGTGGGGATTTATGATACGTTGAAGCAGTGCGCGGTG 2344 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || ||||| || || || || ||||| | | ||||| | ||||| || ||| Sbjct 2345 ATTAGTAAGGCAGCGGGTGGGATTGGTTTGTCGGTGCACAATATTCGCGCGCACGGAGCC 2404 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 || | ||| || || || | ||| || | ||||| ||||| || || ||| || Sbjct 2405 TATATCAAGGGGACGAAGGGGACGAGCAATGGTTTAGTGCCGATGCTGCGTGTGTTTGAC 2464 Query 260159 GACACGGCGCGCTACGTCGACCAGTGC 260185 | |||||||| || || || ||| || Sbjct 2465 GTGACGGCGCGATATGTTGATCAGGGC 2491 >seq18521 Length=3205 Score = 96.9 bits (106), Expect = 5e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||||| |||||| | ||| ||||||||||||| ||||| || |||||| | | Sbjct 248 GCAGATCTGGGACATGTACAAGCAAG-CCGAGGCCTCCTTCTGGACGGCAGAGGAGCTGG 190 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 |||| | | ||||| | |||||| | ||| ||| | ||||| ||||| || Sbjct 189 ACCTGGCCCACGACAAGACGGACTGGGAGAAGCTCTCTGACAAAGAGCGTCATTTTGTCT 130 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 ||||||||| | |||| || |||||| ||||| ||||| |||||| ||||| Sbjct 129 CGCACGTCCTTG-CTTTCTTTGCCGCCTCGGATGGGATCGTCAATGAGAACTTGGCC 74 >seq22075 Length=10782 Score = 95.1 bits (104), Expect = 2e-13 Identities = 128/173 (74%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 1817561 CCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGT 1817619 |||||||||| || || |||| |||||||| || | |||||||||||| ||||| |||| Sbjct 4302 CCTCGGCGCGGGCCTCCTCAGTCTGGGGCAGGTGCATGTTCATCTCGTCCCCGTCGAAGT 4361 Query 1817620 CGGCATTGTAGGTGCCCG-TGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGC 1817678 |||| ||||||| || || |||| | |||||| || | ||| || | ||||||| | Sbjct 4362 CGGCGTTGTAGG-GCGCGCAGACGCACTCGTTGAAGCGGAAGGTGCGCCAGGGCATGACC 4420 Query 1817679 ACCACCTTGTG---CATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTT 1817728 || ||| |||| |||||| | |||| | |||||||||||||| Sbjct 4421 TTGACGCGGTGGGCCATG---ATGGAGAGCTTGTGCAAAGAGGGCTGCCGGTT 4470 >seq16840 Length=1889 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 |||||||||||||| ||||||||||||| | | | ||| || ||||||| ||||||||| Sbjct 10 CGCGAGATCCAGACGGCCGTGCGCCTGACCCTCCCCGGTGAGCTGGCCAAGCACGCCGTG 69 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 70 TCCGAGGGCACCA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175516514322142