Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13286 143 2e-29 seq22358 114 1e-20 seq5368 91.5 1e-13 seq10165 86.0 6e-12 >seq13286 Length=1322 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | ||||||||| || | || |||||| || |||||||| || | Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| ||||||||||| ||||| || || | ||||||||||| | || Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||||||||||| | | | ||||||||| | ||||| Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 938 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| ||||||| || || || || || ||||| Sbjct 937 TCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq22358 Length=3586 Score = 114 bits (126), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC-GCAA 35603 ||||||||| |||||||| || | | || || |||| ||||||||||| ||| || | Sbjct 3291 CTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGA 3232 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | || | ||||||||||| | || | || |||||||||| |||||||||||||| | Sbjct 3231 AGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACAT 3172 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | || || || | ||||| || || ||||||| || || | Sbjct 3171 TCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGA 3112 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 3111 CGAAGATTTGCAT 3099 >seq5368 Length=5397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| || | ||||||||||| | || | || ||||||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| || |||| | | | |||||||| | ||||| || | ||||| Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||||| || || || || || ||||| Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 >seq10165 Length=1505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTG 35674 |||||||| | || | || ||||||||| |||||| ||||||| | | | |||| Sbjct 4 TGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTG 63 Query 35675 TCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734 ||||||| ||||| |||| |||||| || || ||||||| || || || || |||||| Sbjct 64 TCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGC 123 Query 35735 AT 35736 || Sbjct 124 AT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450659539618280